Circular Genomic Permutation using Genome Wide Association
p-Values
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Documentation for package ‘genomicper’ version 1.7
Help Pages
| genomicper-package | Circular Genomic Permutations |
| demo | GWAS p_values demo data |
| genes_permutation | Gene-level Permutations |
| genome_order | Genome Order |
| genomicper | Circular Genomic Permutations |
| get_pathways | Pathways |
| get_results | Circular Permutation Results |
| hyprbg | Hypergeometric Test (phyper) |
| plot_results | Plot Results Circular Permutation |
| read2_paths | Read to SNPs to sets; Map SNPs to gene-sets/pathways |
| read_pvals | Read GWAS p-values of association and Merge with SNP annotations |
| RHSA109582 | Reactome Pathway examples |
| RHSA1474244 | Reactome Pathway examples |
| RHSA164843 | Reactome Pathway examples |
| RHSA446343 | Reactome Pathway examples |
| RHSA8876384 | Reactome Pathway examples |
| RHSA8964572 | Reactome Pathway examples |
| RHSAXXXXX | Reactome Pathway examples |
| SNPsAnnotation | SNPs-Genes annotation to Distance 0 (SNPs within a gene) |
| snps_permutation | SNP-level permutations |