Ranking of Pathogen Strains
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Documentation for package ‘StrainRanking’ version 1.2
Help Pages
| StrainRanking-package | Ranking of Pathogen Strains |
| China | Compositions of Magnaporthe oryzae collected in China |
| Clades | Compositions of Pseudomonas syringae at the clade resolution |
| DG | Class '"DGobj"' |
| DG class | Class '"DGobj"' |
| DG object | Class '"DGobj"' |
| DGobj | Class '"DGobj"' |
| DGobj-class | Class '"DGobj"' |
| DGobj.rawdata | Construction of a DG object from raw data |
| DGobj.simul.mechanistic | Simulation of a DG object under a mechanistic model |
| DGobj.simul.regression | Simulation of a DG object under a regression model |
| Galibier | Compositions of Puccinia triticina in Galibier crops |
| generation.alpha.3strains | Generation of parameters for the simulations under the regression model |
| gmcpic.test | Function implementing the Generalized Monte Carlo plug-in test with calibration (GMCPIC test) |
| Haplotypes | Compositions of Pseudomonas syringae at the haplotype resolution |
| Kalango | Compositions of Puccinia triticina in Kalango crops |
| Madagascar | Compositions of Magnaporthe oryzae collected in Madagascar |
| MoryzaeChina | Compositions of Magnaporthe oryzae collected in China |
| MoryzaeMadagascar | Compositions of Magnaporthe oryzae collected in Madagascar |
| names-method | Class '"DGobj"' |
| PathogenCompositionMoryzaeChina | Compositions of Magnaporthe oryzae collected in China |
| PathogenCompositionMoryzaeMadagascar | Compositions of Magnaporthe oryzae collected in Madagascar |
| PathogenCompositionPsyringaeClades | Compositions of Pseudomonas syringae at the clade resolution |
| PathogenCompositionPsyringaeHaplotypes | Compositions of Pseudomonas syringae at the haplotype resolution |
| PathogenCompositionPsyringaePhylogroups | Compositions of Pseudomonas syringae at the phylogroup resolution |
| PathogenCompositionPtriticinaGalibier | Compositions of Puccinia triticina in Galibier crops |
| PathogenCompositionPtriticinaKalango | Compositions of Puccinia triticina in Kalango crops |
| Phylogroups | Compositions of Pseudomonas syringae at the phylogroup resolution |
| powderymildew | Demographic and genetic real data |
| PsyringaeClades | Compositions of Pseudomonas syringae at the clade resolution |
| PsyringaeHaplotypes | Compositions of Pseudomonas syringae at the haplotype resolution |
| PsyringaePhylogroups | Compositions of Pseudomonas syringae at the phylogroup resolution |
| PtriticinaGalibier | Compositions of Puccinia triticina in Galibier crops |
| PtriticinaKalango | Compositions of Puccinia triticina in Kalango crops |
| ranking.strains | Method for ranking pathogen strains |
| show-method | Class '"DGobj"' |
| StrainRanking | Ranking of Pathogen Strains |
| summary-method | Class '"DGobj"' |
| [-method | Class '"DGobj"' |
| [<--method | Class '"DGobj"' |