| as.LOBdataset | Transformation of a single longitudinal data matrix into 'LoBrA' Data Object. |
| components | 'LoBrA' Data Object (LDO) for Example data set |
| createBGComponents | Simulate background noise peaks |
| createBGData | Simulate background measurements |
| createExampleData | Create example data set for 'LoBrA' |
| createGoudermanData | Create the Gouderman Data Arrangement. |
| createInformativeComponents | Simulate informative peaks |
| GaudermanLDO | An S4 class to represent a 'Gouderman' LDO object, that was generated by the generalized gauderman algorithm. |
| GaudermanLDO-class | An S4 class to represent a 'Gouderman' LDO object, that was generated by the generalized gauderman algorithm. |
| GaudermanModelEvaluation | An S4 class to represent the result of the linear mixed effect modeling on a gauderman LDO. |
| GaudermanModelEvaluation-class | An S4 class to represent the result of the linear mixed effect modeling on a gauderman LDO. |
| getColor | Get colors for the plotting function. |
| getGeneralizedGaudermanDataFrame | Create Peak Matrices for Generalized 'Gauderman' linear mixed effect regression (LMER) Model with parameterized Times |
| getOptimalSpline | Extract the optimal spline model parameters from the ModelSelection Object. |
| getPvalue | Testing differences of groups with respect to a specific value and test. |
| LDO | An S4 class to represent a 'LoBrA' Data Object (LDO). It stores multiple time series data for muliple experiements and multiple Components. It allows repeated measurements of a component, irregular sampling, and unequal temporal spacing of the time points. |
| ldo | 'LoBrA' Data Object (LDO) for Example data set |
| LDO-class | An S4 class to represent a 'LoBrA' Data Object (LDO). It stores multiple time series data for muliple experiements and multiple Components. It allows repeated measurements of a component, irregular sampling, and unequal temporal spacing of the time points. |
| LDOmodelselection | An S4 class to represent a model selection result based on an 'LDO'. |
| LDOmodelselection-class | An S4 class to represent a model selection result based on an 'LDO'. |
| LDOscreening | An S4 class to represent the screening of metabolites in an 'LDO'. |
| LDOscreening-class | An S4 class to represent the screening of metabolites in an 'LDO'. |
| LoBrA | LoBrA: A package for modeling longitudinal breath data |
| lobraModelSelection | Evaluation of different spline variants. |
| longDataExample | 'LoBrA' Example Data Set |
| modelGoudermanLongitudinal | Fitting the Gouderman LME Model with using Gouderman-Data Arrangement. |
| plotGaudermanModel | Plotting helper function to plot a single generalized gouderman Model |
| plotGoudermanLongitudinalResults | Plotting the 'Gouderman' LME Model and Results. |
| plotLDOScreening | Plotting the screening results. |
| plotmodelSelectionEvaluation | Plotting results of Model Evaluation and Selection. |
| plotTimeSeries | Plotting function for a longitudinal data matrix (Internal Function) |
| powerSet | Creating the power set of a set. |
| screening | Screening of background or confounding components |
| selectComponents | Create a new 'LDO' Object that only contains the selected components. |