| chromsearch | Search one chromsome |
| colocalized | Colocalized cluster search. |
| ColocalizedFullSearch | Colocalized full search. |
| colocalized_sequential | Sequential cluster search |
| gensearch | Whole genome search. |
| nfkb1 | NFKB1 bed file |
| nfkb2 | NFKB2 bed file |
| onedim_dist | Create a colocalization matrix |
| relb | RELB bed file |