| checkGCC | Checks the local host for GCC version in the path |
| checkInstallDir | Checks the given directory for the files required for NLME run |
| checkLicenseFile | Checks if NLME run is licensed |
| checkMPISettings | Check MPI settings for the given local host |
| checkRootDir | Check NLME ROOT DIRECTORY for the given local host |
| getTableNames | Table names from the column definition file |
| performBootstrap | NLME Bootstrap Function |
| performEstimationOnSortColumns | Sort specification for multiple estimations |
| performParallelNLMERun | Runs a set of NLME jobs in parallel |
| performProfileEstimation | NLME a profile estimation run on list of fixed effects |
| performShotgunCovarSearch | Shotgun covariate search |
| performStepwiseCovarSearch | NLME stepwise covariate search |
| reconnectToBootstrapNLMERun | Use to reconnect to a grid job |
| UpdateMDLfrom_dmptxt | Update Model text file from NLME output File |