Analysis of RNA Cytosine-5 Methylation

Documentation for package ‘BisRNA’ version 0.2.2

BisRNA-package	Analysis of RNA Cytosine-5 Methylation from bisulfite sequencing experiments
Bisdata	Three synthetic samples of RNA bisulfite sequencing for examples and tests
Bisdata1	Synthetic sample 1 of RNA bisulfite sequencing
Bisdata2	Synthetic sample 2 of RNA bisulfite sequencing
Bisdata3	Synthetic sample 3 of RNA bisulfite sequencing
BisRNA	Analysis of RNA Cytosine-5 Methylation from bisulfite sequencing experiments
class.BisXP	Cast bisulfite experiment data into a BisXP object
fisher.method	Function implementing Fisher's method to combine independent p-values
intersectMatrix	Take intersection of 2 tables
read.BisXP	Read RNA bisulfite experiment data and cast it into a BisXP object
RNAmeth.poisson.par	Find ratio (Poisson parameter / coverage) for one sample of bisulfite-converted RNA
RNAmeth.poisson.test	Test RNA Cytosine methylation based on Poisson model distribution
samples.combine	Combine samples p-values and ratios
testMeth	Apply poisson.test to BS coverage and non-conversion ratio.