| phylocomr-package | Phylocom interface |
| ecovolve | Executables |
| executables | Executables |
| phylocom | Executables |
| phylocomr | Phylocom interface |
| phylocomr-inputs | Expected inputs |
| phylomatic | Executables |
| ph_aot | aot |
| ph_bladj | bladj |
| ph_comdist | comdist |
| ph_comdistnt | comdist |
| ph_comstruct | comstruct |
| ph_comtrait | comtrait |
| ph_ecovolve | ecovolve |
| ph_pd | pd - Faith's index of phylogenetic diversity |
| ph_phylomatic | phylomatic |
| ph_rao | rao - Rao's quadratic entropy |