Fuzzy Similarity in Species Distributions

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Documentation for package ‘fuzzySim’ version 4.33

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fuzzySim-package Fuzzy Similarity in Species Distributions
appendData Append data
biasLayer Compute a bias layer
bioThreat Biotic threat of a stronger over a weaker species based on their favourability values
cleanCoords Clean coordinates
corSelect Select among correlated variables based on a given criterion
distPres (Inverse) distance to the nearest presence
dms2dec Degree-minute-second to decimal degree coordinates
entropy (Fuzzy) entropy
Fav Favourability (probability without the effect of sample prevalence)
favClass Classify favourability into 3 categories (low, intermediate, high)
FDR False Discovery Rate
fuzSim Fuzzy similarity
fuzzyConsensus Fuzzy consensus among model predictions
fuzzyOverlay Overlay operations based on fuzzy logic
fuzzyRangeChange Range change based on continuous (fuzzy) values
fuzzySim Fuzzy Similarity in Species Distributions
getPreds Get model predictions
getRegion Get region
gridRecords Grid (or thin) point occurrence records to the resolution of a raster map
integerCols Classify integer columns
modelTrim Trim off non-significant variables from a model
modOverlap Overall overlap between model predictions
multConvert Multiple conversion
multGLM GLMs with variable selection for multiple species
multicol Analyse multicollinearity in a dataset, including VIF
multTSA Trend Surface Analysis for multiple species
pairwiseRangemaps Pairwise intersection (and union) of range maps
partialResp Partial response plot(s) for probability or favourability
percentTestData Percent test data
prevalence Prevalence
rangemapSim Pairwise similarity between rangemaps
rarity (Fuzzy) rarity
rotif.env Rotifers and environmental variables on TDWG level 4 regions of the world
rotifers Rotifer species on TDWG level 4 regions of the world
selectAbsences Select (spatially biased) absence rows.
sharedFav Shared favourability for two competing species
simFromSetOps Calculate similarity from set operations
simMat Pair-wise (fuzzy) similarity matrix
spCodes Obtain unique abbreviations of species names
splist2presabs Convert a species list to a presence-absence table
stepByStep Compare model predictions along a stepwise variable selection process
stepwise Stepwise regression
summaryWald Model summary with Wald (instead of z) test statistics
timer Timer
transpose Transpose (part of) a matrix or dataframe
triMatInd Triangular matrix indices
vulnerability (Fuzzy) vulnerability