Facilitate Exploration of touRR optimisatioN

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Documentation for package ‘ferrn’ version 0.1.0

Help Pages

add_anchor A ggproto for drawing anchor points
add_anno A ggproto for annotating the symmetry of the starting points
add_dir_search A ggproto for drawing directional search points
add_end A ggproto for drawing start points
add_interp A ggproto for drawing interpolation path
add_interp_last A ggproto for drawing finish points
add_interrupt A ggproto for annotating the interrupted path
add_search A ggproto for drawing search points
add_space A ggproto for drawing circle
add_start A ggproto for drawing start points
add_theo A ggproto for drawing the theoretical basis, if applicable
bind_random Bind random bases in the projection bases space
bind_random_matrix Bind random bases in the projection bases space as a matrix
bind_theoretical Bind the theoretical best record
boa Simulated sine, pipe, and gaussian mixture
boa5 Simulated sine, pipe, and gaussian mixture
boa6 Simulated sine, pipe, and gaussian mixture
botanical_pal A customised colour palette based on Australian botanies
botanical_palettes A customised colour palette based on Australian botanies
calc_smoothness Function to calculate smoothness and squintability
calc_squintability Function to calculate smoothness and squintability
clean_method Clean method names
compute_pca Helper functions for 'explore_space_pca()'
compute_projection Plot the projection from the optimisation data collected from projection pursuit
explore_space_end Plot the PCA projection of the projection bases space
explore_space_pca Plot the PCA projection of the projection bases space
explore_space_start Plot the PCA projection of the projection bases space
explore_space_tour Plot the grand tour animation of the bases space in high dimension
explore_trace_interp Plot the trace the search progression
explore_trace_search Plot the count in each iteration
fit_ks Function to calculate smoothness and squintability
fit_nls Function to calculate smoothness and squintability
flip_sign Helper functions for 'explore_space_pca()'
format_label Better label formatting to avoid overlapping
get_anchor Functions to get components from the data collecting object
get_basis_matrix Functions to get components from the data collecting object
get_best Functions to get components from the data collecting object
get_dir_search Functions to get components from the data collecting object
get_interp Functions to get components from the data collecting object
get_interp_last Functions to get components from the data collecting object
get_interrupt Functions to get components from the data collecting object
get_search Functions to get components from the data collecting object
get_search_count Functions to get components from the data collecting object
get_space_param Functions to get components from the data collecting object
get_start Functions to get components from the data collecting object
get_theo Functions to get components from the data collecting object
holes_1d_better Data objects collected during the projection pursuit optimisation
holes_1d_geo Data objects collected during the projection pursuit optimisation
holes_1d_jellyfish Data objects collected during the projection pursuit optimisation
holes_2d_better Data objects collected during the projection pursuit optimisation
holes_2d_better_max_tries Data objects collected during the projection pursuit optimisation
pipe1000 Simulated sine, pipe, and gaussian mixture
pipe1000_10d Simulated sine, pipe, and gaussian mixture
pipe1000_12d Simulated sine, pipe, and gaussian mixture
pipe1000_8d Simulated sine, pipe, and gaussian mixture
plot_projection Plot the projection from the optimisation data collected from projection pursuit
prep_space_tour Plot the grand tour animation of the bases space in high dimension
print.basis_df Function to calculate smoothness and squintability
print.smoothness_res Function to calculate smoothness and squintability
print.squintability_res Function to calculate smoothness and squintability
sample_bases Function to calculate smoothness and squintability
scale_color_continuous_botanical continuous scale colour function
scale_color_discrete_botanical continuous scale colour function
scale_fill_continuous_botanical continuous scale colour function
scale_fill_discrete_botanical continuous scale colour function
sine1000 Simulated sine, pipe, and gaussian mixture
sine1000_8d Simulated sine, pipe, and gaussian mixture
tbl_sum.basis_df Function to calculate smoothness and squintability
tbl_sum.smoothness_res Function to calculate smoothness and squintability
tbl_sum.squintability_res Function to calculate smoothness and squintability
theme_fern A specific theme for trace plots