Retrieving Information of Proteins from Uniprot

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Documentation for package ‘UniprotR’ version 2.5.0

• DESCRIPTION file.

Help Pages

ConstructGenesTree	Connect and parse UniProt information.
ConstructLocTree	Connect and parse UniProt information.
ConvertID	Connect and parse UniProt database identifiers information.
Enrichment.BP	Connect and parse UniProt information
Enrichment.CC	Connect and parse UniProt information
Enrichment.KEGG	Connect and parse UniProt information
Enrichment.MF	Connect and parse UniProt information
Enrichment.REAC	Connect and parse UniProt information
Get.diseases	Connect and parse UniProt information.
GetAccessionList	Connect and parse UniProt information.
GetExpression	Connect and parse UniProt Expression information.
GetFamily_Domains	Connect and parse UniProt Family Domains information.
GetGeneral_Information	Connect and parse UniProt General Information.
GetMiscellaneous	Connect and parse UniProt Miscellaneous information.
GetNamesTaxa	Connect and parse UniProt Names Taxa information.
GetPathology_Biotech	Connect and parse UniProt Pathology_Biotech information.
GetpdbStructure	Connect and parse UniProt information.
GetProteinAnnontate	Connect and parse UniProt information.
GetProteinFunction	Connect and parse UniProt Protein Function information.
GetProteinGOInfo	Connect and parse UniProt proteins gene ontology information.
GetProteinInteractions	Connect and parse UniProt protein Interactions information.
GetproteinNetwork	Connect and parse stringdb information.
GetproteinNetwork_all	Connect and parse stringdb information.
GetProteomeFasta	Connect and DOWNLOAD Proteome info.
GetProteomeInfo	Connect and DOWNLOAD Proteome info.
GetPTM_Processing	Connect and parse UniProt PTM_Processsing information.
GetPublication	Connect and parse UniProt Publication about a protein information.
GETSeqFastaUniprot	Connect and parse UniProt information.
GetSeqLength	Connect and parse UniProt Sequences information.
GetSequenceIso	Connect and parse UniProt Sequences information.
GetSequences	Connect and parse UniProt Sequences information.
GetStructureInfo	Connect and parse UniProt protein Structure information.
GetSubcellular_location	Connect and parse UniProt protein Subcellular location information.
Goparse	Connect and parse UniProt information.
HandleBadRequests	Handle bad requests This Function is used to handle possible errors when trying to get url response.
Pathway.Enr	Connect and parse UniProt information
Plot.GOMolecular	Connect and parse UniProt information.
Plot.GOSubCellular	Connect and parse UniProt information.
PlotAcidity	Connect and parse UniProt information.
PlotCharge	Connect and parse UniProt information.
PlotChromosomeInfo	Connect and parse UniProt information.
PlotGenesNetwork	Connect and parse UniProt information.
PlotGOAll	Connect and parse UniProt information.
plotGoannotation	Connect and parse UniProt information.
PlotGOBiological	Connect and parse UniProt information.
PlotGoInfo	Connect and parse UniProt information.
PlotGoterms	Connect and parse UniProt information.
PlotGravy	Connect and parse UniProt information.
PlotPhysicochemical	Connect and parse UniProt information.
PlotproteinExist	Connect and parse UniProt information.
PlotProteinGO_bio	Connect and parse UniProt information.
PlotProteinGO_cel	Connect and parse UniProt information.
PlotProteinGO_molc	Connect and parse UniProt information.
PlotproteinStatus	Connect and parse UniProt information.
PlotProteinTaxa	Connect and parse UniProt information.
ProcessAcc	Connect and parse UniProt information.