Metropolis Sampler and Supporting Functions for Estimating Animal Movement from Archival Tags and Satellite Fixes

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Documentation for package ‘tripEstimation’ version 0.0-46

Help Pages

as.image.pimg Convert to image list
as.local.pimg Convert to image list
as.matrix.pimg Convert to image list
astro Calculations for position of the sun and moon
behav.bin Bin MCMC chains.
bin.pimg Bin MCMC chains.
bits Set and get bits from binary masks.
bits<- Set and get bits from binary masks.
bmvnorm.proposal Manage proposal functions tune variance for metropolis sampler
chain.dim Manage MCMC cache.
chain.read Manage MCMC cache.
chain.write Manage MCMC cache.
chunk.bin Bin MCMC chains.
combine Convert to image list
coords.pimg Convert to image list
elevation Calculate elevation of astronomical objects
EQUHOR Calculations for position of the sun and moon
FRAC Calculations for position of the sun and moon
get.mask Create, access and manipulate spatial masks
initialize.x Diagnose and initialize light level estimation.
julcent Julian day and Julian century calculations from date-time values
julday Julian day and Julian century calculations from date-time values
k.prior Older versions of solar location estimation
light.quantile Diagnose and initialize light level estimation.
LMST Calculations for position of the sun and moon
lunar Calculations for position of the sun and moon
metropolis Metropolis-Hastings sampler for location estimation for archival and satellite tag
metropolis0 Metropolis-Hastings sampler for location estimation for archival and satellite tag
mini.sun Calculations for position of the sun and moon
MJD Calculations for position of the sun and moon
mkCalibration Create calibration of solar elevation to measured light level.
mkElevationSeg Older versions of solar location estimation
mkLookup Create a lookup function to query locations against spatial masks
mkMaskObject Create, access and manipulate spatial masks
mkNLPosterior Older versions of solar location estimation
mkSmall Create, access and manipulate spatial masks
mvnorm.proposal Manage proposal functions tune variance for metropolis sampler
norm.proposal Manage proposal functions tune variance for metropolis sampler
old.dist.gc Older versions of solar location estimation
old.find.init Older versions of solar location estimation
old.metropolis Older versions of solar location estimation
old.mkLookup Older versions of solar location estimation
pick Choose twilight segments interactively from light data.
picksegs Choose twilight segments interactively from light data.
pimg Create a collection of probability images, for MCMC binning.
pimg.list Create a collection of probability images, for MCMC binning.
POLAR Calculations for position of the sun and moon
position.logp Diagnose and initialize light level estimation.
satellite.model Function to create a satellite model object for metropolis location sampler
set.mask<- Create, access and manipulate spatial masks
show.segment Diagnose and initialize light level estimation.
solar Calculate solar postion parameters
solar.model Function to create a solar model object for metropolis location sampler
unzipper Convert to image list