| calc.locallod | Calculate LOD score at physical position of each gene |
| combinedist | Combine distance matrices into a single such |
| corbetw2mat | Calculate correlations between columns of two matrices |
| distee | Calculate distance between two gene expression data sets |
| disteg | Calculate distance between two gene expression data sets |
| expr-data | Example gene expression data |
| expr1 | Example gene expression data |
| expr2 | Example gene expression data |
| f2cross | Example experimental cross data |
| find.gene.pseudomarker | Find nearest peudomarker to each gene |
| findCommonID | Find individuals in common between a cross and a phenotype matrix |
| fscale | Standardize the columns of a matrix |
| genepos | Genomic positions of genes in simulated expression data |
| lineupversion | Installed version of R/lineup |
| omitdiag | Replace the diagonal in a distance matrix with missing values |
| plot.lineupdist | Plot summary of inter-individual distances |
| plot2dist | Plot two sets of inter-individual distances against one another |
| plotEGclass | Plot classifier of eQTL genotype from expression data |
| pmap | Physical map of markers |
| pulldiag | Pull out the diagonal from a distance matrix |
| subset.lineupdist | Subsetting distance matrix |
| summary.lineupdist | Summarize inter-individual distances |
| [.lineupdist | Subsetting distance matrix |