| diffBeta1 |
First derivative of beta minus-log-pdf with respect to first parameter |
| diffBeta2 |
First derivative of beta minus-log-pdf with respect to second parameter |
| exampleMethBS |
Sample Data: Methylation (red) signals from conventional bisulfite conversion. |
| exampleMethOxBS |
Sample Data: Methylation (red) signals from oxy-bisulfite conversion. |
| exampleUnmethBS |
Sample Data: Unmethylated (green) signals from conventional bisulfite conversion. |
| exampleUnmethOxBS |
Sample Data: Unmethylated (green) signals from oxy-bisulfite conversion. |
| fitOneOxBS |
Fit one OxyBS result |
| fitOxBS |
Fit OxyBS for one specimen |
| likeOxBS |
Likelihood function for C/5mC/5hmC likelihood estimator |
| scoreOxBS |
Score function for C/5mC/5hmC likelihood estimator |
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