| addranks | Adds rank information to a 'coh' or 'wlmtest' object |
| addwmfs | Adds wavelet mean field information to a 'clust' object |
| addwpmfs | Adds wavelet phasor mean field information to a 'clust' object |
| bandtest | Aggregate significance across a timescale band |
| bandtest.coh | Aggregate significance across a timescale band |
| bandtest.default | Aggregate significance across a timescale band |
| bandtest.wlmtest | Aggregate significance across a timescale band |
| bctrans | The one-parameter family of Box-Cox transformations |
| cleandat | Clean (spatio)temporal data matrices to make them ready for analyses using the 'wsyn' package |
| cluseigen | Community structure detection in networks |
| clust | Detection and description of clusters of synchronous locations |
| clust_methods | Basic methods for the 'clust' class |
| coh | Coherence |
| coh_methods | Basic methods for the 'coh' class |
| errcheck_stdat | Error check for appropriate spatio-temporal data |
| errcheck_times | Error check 'times' |
| errcheck_tsdat | Error check for appropriate temporal data |
| errcheck_tts | Error check whether inputs are suitable for a tts object |
| errcheck_wavparam | Error check wavelet transform parameters |
| fastcohtest | Fast algorithm for significance testing coherence using Fourier surrogates |
| fftsurrog | Surrogate time series using Fourier surrogates |
| get_adj | Set and get methods for classes in the 'wsyn' package |
| get_adj.clust | Basic methods for the 'clust' class |
| get_adj.default | Set and get methods for classes in the 'wsyn' package |
| get_bandp | Set and get methods for classes in the 'wsyn' package |
| get_bandp.coh | Basic methods for the 'coh' class |
| get_bandp.default | Set and get methods for classes in the 'wsyn' package |
| get_bandp.wlmtest | Basic methods for the 'wlmtest' class |
| get_clusters | Set and get methods for classes in the 'wsyn' package |
| get_clusters.clust | Basic methods for the 'clust' class |
| get_clusters.default | Set and get methods for classes in the 'wsyn' package |
| get_coefs | Set and get methods for classes in the 'wsyn' package |
| get_coefs.default | Set and get methods for classes in the 'wsyn' package |
| get_coefs.wlm | Basic methods for the 'wlm' class |
| get_coher | Set and get methods for classes in the 'wsyn' package |
| get_coher.coh | Basic methods for the 'coh' class |
| get_coher.default | Set and get methods for classes in the 'wsyn' package |
| get_coher.wlm | Basic methods for the 'wlm' class |
| get_coords | Set and get methods for classes in the 'wsyn' package |
| get_coords.clust | Basic methods for the 'clust' class |
| get_coords.default | Set and get methods for classes in the 'wsyn' package |
| get_dat | Set and get methods for classes in the 'wsyn' package |
| get_dat.clust | Basic methods for the 'clust' class |
| get_dat.default | Set and get methods for classes in the 'wsyn' package |
| get_dat.wlm | Basic methods for the 'wlm' class |
| get_dat.wmf | Basic methods for the 'wmf' class |
| get_dat.wpmf | Basic methods for the 'wpmf' class |
| get_dat.wt | Basic methods for the 'wt' class |
| get_dat1 | Set and get methods for classes in the 'wsyn' package |
| get_dat1.coh | Basic methods for the 'coh' class |
| get_dat1.default | Set and get methods for classes in the 'wsyn' package |
| get_dat2 | Set and get methods for classes in the 'wsyn' package |
| get_dat2.coh | Basic methods for the 'coh' class |
| get_dat2.default | Set and get methods for classes in the 'wsyn' package |
| get_drop | Set and get methods for classes in the 'wsyn' package |
| get_drop.default | Set and get methods for classes in the 'wsyn' package |
| get_drop.wlmtest | Basic methods for the 'wlmtest' class |
| get_methodspec | Set and get methods for classes in the 'wsyn' package |
| get_methodspec.clust | Basic methods for the 'clust' class |
| get_methodspec.default | Set and get methods for classes in the 'wsyn' package |
| get_mns | Set and get methods for classes in the 'wsyn' package |
| get_mns.clust | Basic methods for the 'clust' class |
| get_mns.default | Set and get methods for classes in the 'wsyn' package |
| get_modres | Set and get methods for classes in the 'wsyn' package |
| get_modres.clust | Basic methods for the 'clust' class |
| get_modres.default | Set and get methods for classes in the 'wsyn' package |
| get_modval | Set and get methods for classes in the 'wsyn' package |
| get_modval.default | Set and get methods for classes in the 'wsyn' package |
| get_modval.wlm | Basic methods for the 'wlm' class |
| get_norm | Set and get methods for classes in the 'wsyn' package |
| get_norm.coh | Basic methods for the 'coh' class |
| get_norm.default | Set and get methods for classes in the 'wsyn' package |
| get_norm.wlm | Basic methods for the 'wlm' class |
| get_ranks | Set and get methods for classes in the 'wsyn' package |
| get_ranks.coh | Basic methods for the 'coh' class |
| get_ranks.default | Set and get methods for classes in the 'wsyn' package |
| get_ranks.wlmtest | Basic methods for the 'wlmtest' class |
| get_sigmethod | Set and get methods for classes in the 'wsyn' package |
| get_sigmethod.coh | Basic methods for the 'coh' class |
| get_sigmethod.default | Set and get methods for classes in the 'wsyn' package |
| get_signif | Set and get methods for classes in the 'wsyn' package |
| get_signif.coh | Basic methods for the 'coh' class |
| get_signif.default | Set and get methods for classes in the 'wsyn' package |
| get_signif.wlmtest | Basic methods for the 'wlmtest' class |
| get_signif.wpmf | Basic methods for the 'wpmf' class |
| get_times | Set and get methods for classes in the 'wsyn' package |
| get_times.clust | Basic methods for the 'clust' class |
| get_times.coh | Basic methods for the 'coh' class |
| get_times.default | Set and get methods for classes in the 'wsyn' package |
| get_times.tts | Basic methods for the 'tts' class |
| get_times.wlm | Basic methods for the 'wlm' class |
| get_times.wmf | Basic methods for the 'wmf' class |
| get_times.wpmf | Basic methods for the 'wpmf' class |
| get_times.wt | Basic methods for the 'wt' class |
| get_timescales | Set and get methods for classes in the 'wsyn' package |
| get_timescales.coh | Basic methods for the 'coh' class |
| get_timescales.default | Set and get methods for classes in the 'wsyn' package |
| get_timescales.tts | Basic methods for the 'tts' class |
| get_timescales.wlm | Basic methods for the 'wlm' class |
| get_timescales.wmf | Basic methods for the 'wmf' class |
| get_timescales.wpmf | Basic methods for the 'wpmf' class |
| get_timescales.wt | Basic methods for the 'wt' class |
| get_values | Set and get methods for classes in the 'wsyn' package |
| get_values.default | Set and get methods for classes in the 'wsyn' package |
| get_values.tts | Basic methods for the 'tts' class |
| get_values.wmf | Basic methods for the 'wmf' class |
| get_values.wpmf | Basic methods for the 'wpmf' class |
| get_values.wt | Basic methods for the 'wt' class |
| get_wlmobj | Set and get methods for classes in the 'wsyn' package |
| get_wlmobj.default | Set and get methods for classes in the 'wsyn' package |
| get_wlmobj.wlmtest | Basic methods for the 'wlmtest' class |
| get_wmfs | Set and get methods for classes in the 'wsyn' package |
| get_wmfs.clust | Basic methods for the 'clust' class |
| get_wmfs.default | Set and get methods for classes in the 'wsyn' package |
| get_wpmfs | Set and get methods for classes in the 'wsyn' package |
| get_wpmfs.clust | Basic methods for the 'clust' class |
| get_wpmfs.default | Set and get methods for classes in the 'wsyn' package |
| get_wtopt | Set and get methods for classes in the 'wsyn' package |
| get_wtopt.coh | Basic methods for the 'coh' class |
| get_wtopt.default | Set and get methods for classes in the 'wsyn' package |
| get_wtopt.wlm | Basic methods for the 'wlm' class |
| get_wtopt.wmf | Basic methods for the 'wmf' class |
| get_wtopt.wpmf | Basic methods for the 'wpmf' class |
| get_wtopt.wt | Basic methods for the 'wt' class |
| get_wts | Set and get methods for classes in the 'wsyn' package |
| get_wts.default | Set and get methods for classes in the 'wsyn' package |
| get_wts.wlm | Basic methods for the 'wlm' class |
| is.connected | Tests if a graph is connected |
| makeunweighted | For converting certain synchrony matrices to unweighted versions |
| mnphase | Mean phase of coherence |
| modularity | Modularity of a community structure of a graph |
| normforcoh | Normalization for the 'coh' function |
| plotmag | For plotting the magnitude of values in 'tts', 'coh' and 'wlmtest' objects |
| plotmag.coh | For plotting the magnitude of values in 'tts', 'coh' and 'wlmtest' objects |
| plotmag.default | For plotting the magnitude of values in 'tts', 'coh' and 'wlmtest' objects |
| plotmag.tts | For plotting the magnitude of values in 'tts', 'coh' and 'wlmtest' objects |
| plotmag.wlmtest | For plotting the magnitude of values in 'tts', 'coh' and 'wlmtest' objects |
| plotmag.wmf | For plotting the magnitude of values in 'tts', 'coh' and 'wlmtest' objects |
| plotmag.wpmf | For plotting the magnitude of values in 'tts', 'coh' and 'wlmtest' objects |
| plotmag.wt | For plotting the magnitude of values in 'tts', 'coh' and 'wlmtest' objects |
| plotmap | Map clusters from a 'clust' object |
| plotphase | For plotting the phases of values in 'tts' and 'coh' objects |
| plotphase.coh | For plotting the phases of values in 'tts' and 'coh' objects |
| plotphase.default | For plotting the phases of values in 'tts' and 'coh' objects |
| plotphase.tts | For plotting the phases of values in 'tts' and 'coh' objects |
| plotphase.wmf | For plotting the phases of values in 'tts' and 'coh' objects |
| plotphase.wpmf | For plotting the phases of values in 'tts' and 'coh' objects |
| plotphase.wt | For plotting the phases of values in 'tts' and 'coh' objects |
| plotrank | Plots 'ranks' slot for 'coh' and 'wlmtest' objects |
| plotrank.coh | Plots 'ranks' slot for 'coh' and 'wlmtest' objects |
| plotrank.default | Plots 'ranks' slot for 'coh' and 'wlmtest' objects |
| plotrank.wlmtest | Plots 'ranks' slot for 'coh' and 'wlmtest' objects |
| power | Power of a 'tts' object |
| power.tts | Power of a 'tts' object |
| predsync | Predicted synchrony of a wavelet linear model |
| predsync.wlm | Predicted synchrony of a wavelet linear model |
| print.clust | Basic methods for the 'clust' class |
| print.coh | Basic methods for the 'coh' class |
| print.summary_wsyn | Print method for 'summary_wsyn' class |
| print.tts | Basic methods for the 'tts' class |
| print.wlm | Basic methods for the 'wlm' class |
| print.wlmtest | Basic methods for the 'wlmtest' class |
| print.wmf | Basic methods for the 'wmf' class |
| print.wpmf | Basic methods for the 'wpmf' class |
| print.wt | Basic methods for the 'wt' class |
| setget_methods | Set and get methods for classes in the 'wsyn' package |
| setmints | Shifts a vector according to the argument mints |
| set_adj | Set and get methods for classes in the 'wsyn' package |
| set_adj.clust | Basic methods for the 'clust' class |
| set_adj.default | Set and get methods for classes in the 'wsyn' package |
| set_bandp | Set and get methods for classes in the 'wsyn' package |
| set_bandp.coh | Basic methods for the 'coh' class |
| set_bandp.default | Set and get methods for classes in the 'wsyn' package |
| set_bandp.wlmtest | Basic methods for the 'wlmtest' class |
| set_clusters | Set and get methods for classes in the 'wsyn' package |
| set_clusters.clust | Basic methods for the 'clust' class |
| set_clusters.default | Set and get methods for classes in the 'wsyn' package |
| set_coefs | Set and get methods for classes in the 'wsyn' package |
| set_coefs.default | Set and get methods for classes in the 'wsyn' package |
| set_coefs.wlm | Basic methods for the 'wlm' class |
| set_coher | Set and get methods for classes in the 'wsyn' package |
| set_coher.coh | Basic methods for the 'coh' class |
| set_coher.default | Set and get methods for classes in the 'wsyn' package |
| set_coher.wlm | Basic methods for the 'wlm' class |
| set_coords | Set and get methods for classes in the 'wsyn' package |
| set_coords.clust | Basic methods for the 'clust' class |
| set_coords.default | Set and get methods for classes in the 'wsyn' package |
| set_dat | Set and get methods for classes in the 'wsyn' package |
| set_dat.clust | Basic methods for the 'clust' class |
| set_dat.default | Set and get methods for classes in the 'wsyn' package |
| set_dat.wlm | Basic methods for the 'wlm' class |
| set_dat.wmf | Basic methods for the 'wmf' class |
| set_dat.wpmf | Basic methods for the 'wpmf' class |
| set_dat.wt | Basic methods for the 'wt' class |
| set_dat1 | Set and get methods for classes in the 'wsyn' package |
| set_dat1.coh | Basic methods for the 'coh' class |
| set_dat1.default | Set and get methods for classes in the 'wsyn' package |
| set_dat2 | Set and get methods for classes in the 'wsyn' package |
| set_dat2.coh | Basic methods for the 'coh' class |
| set_dat2.default | Set and get methods for classes in the 'wsyn' package |
| set_drop | Set and get methods for classes in the 'wsyn' package |
| set_drop.default | Set and get methods for classes in the 'wsyn' package |
| set_drop.wlmtest | Basic methods for the 'wlmtest' class |
| set_methodspecs | Set and get methods for classes in the 'wsyn' package |
| set_methodspecs.clust | Basic methods for the 'clust' class |
| set_methodspecs.default | Set and get methods for classes in the 'wsyn' package |
| set_mns | Set and get methods for classes in the 'wsyn' package |
| set_mns.clust | Basic methods for the 'clust' class |
| set_mns.default | Set and get methods for classes in the 'wsyn' package |
| set_modres | Set and get methods for classes in the 'wsyn' package |
| set_modres.clust | Basic methods for the 'clust' class |
| set_modres.default | Set and get methods for classes in the 'wsyn' package |
| set_modval | Set and get methods for classes in the 'wsyn' package |
| set_modval.default | Set and get methods for classes in the 'wsyn' package |
| set_modval.wlm | Basic methods for the 'wlm' class |
| set_norm | Set and get methods for classes in the 'wsyn' package |
| set_norm.coh | Basic methods for the 'coh' class |
| set_norm.default | Set and get methods for classes in the 'wsyn' package |
| set_norm.wlm | Basic methods for the 'wlm' class |
| set_ranks | Set and get methods for classes in the 'wsyn' package |
| set_ranks.coh | Basic methods for the 'coh' class |
| set_ranks.default | Set and get methods for classes in the 'wsyn' package |
| set_ranks.wlmtest | Basic methods for the 'wlmtest' class |
| set_sigmethod | Set and get methods for classes in the 'wsyn' package |
| set_sigmethod.coh | Basic methods for the 'coh' class |
| set_sigmethod.default | Set and get methods for classes in the 'wsyn' package |
| set_signif | Set and get methods for classes in the 'wsyn' package |
| set_signif.coh | Basic methods for the 'coh' class |
| set_signif.default | Set and get methods for classes in the 'wsyn' package |
| set_signif.wlmtest | Basic methods for the 'wlmtest' class |
| set_signif.wpmf | Basic methods for the 'wpmf' class |
| set_times | Set and get methods for classes in the 'wsyn' package |
| set_times.clust | Basic methods for the 'clust' class |
| set_times.coh | Basic methods for the 'coh' class |
| set_times.default | Set and get methods for classes in the 'wsyn' package |
| set_times.tts | Basic methods for the 'tts' class |
| set_times.wlm | Basic methods for the 'wlm' class |
| set_times.wmf | Basic methods for the 'wmf' class |
| set_times.wpmf | Basic methods for the 'wpmf' class |
| set_times.wt | Basic methods for the 'wt' class |
| set_timescales | Set and get methods for classes in the 'wsyn' package |
| set_timescales.coh | Basic methods for the 'coh' class |
| set_timescales.default | Set and get methods for classes in the 'wsyn' package |
| set_timescales.tts | Basic methods for the 'tts' class |
| set_timescales.wlm | Basic methods for the 'wlm' class |
| set_timescales.wmf | Basic methods for the 'wmf' class |
| set_timescales.wpmf | Basic methods for the 'wpmf' class |
| set_timescales.wt | Basic methods for the 'wt' class |
| set_values | Set and get methods for classes in the 'wsyn' package |
| set_values.default | Set and get methods for classes in the 'wsyn' package |
| set_values.tts | Basic methods for the 'tts' class |
| set_values.wmf | Basic methods for the 'wmf' class |
| set_values.wpmf | Basic methods for the 'wpmf' class |
| set_values.wt | Basic methods for the 'wt' class |
| set_wlmobj | Set and get methods for classes in the 'wsyn' package |
| set_wlmobj.default | Set and get methods for classes in the 'wsyn' package |
| set_wlmobj.wlmtest | Basic methods for the 'wlmtest' class |
| set_wmfs | Set and get methods for classes in the 'wsyn' package |
| set_wmfs.clust | Basic methods for the 'clust' class |
| set_wmfs.default | Set and get methods for classes in the 'wsyn' package |
| set_wpmfs | Set and get methods for classes in the 'wsyn' package |
| set_wpmfs.clust | Basic methods for the 'clust' class |
| set_wpmfs.default | Set and get methods for classes in the 'wsyn' package |
| set_wtopt | Set and get methods for classes in the 'wsyn' package |
| set_wtopt.coh | Basic methods for the 'coh' class |
| set_wtopt.default | Set and get methods for classes in the 'wsyn' package |
| set_wtopt.wlm | Basic methods for the 'wlm' class |
| set_wtopt.wmf | Basic methods for the 'wmf' class |
| set_wtopt.wpmf | Basic methods for the 'wpmf' class |
| set_wtopt.wt | Basic methods for the 'wt' class |
| set_wts | Set and get methods for classes in the 'wsyn' package |
| set_wts.default | Set and get methods for classes in the 'wsyn' package |
| set_wts.wlm | Basic methods for the 'wlm' class |
| summary.clust | Basic methods for the 'clust' class |
| summary.coh | Basic methods for the 'coh' class |
| summary.tts | Basic methods for the 'tts' class |
| summary.wlm | Basic methods for the 'wlm' class |
| summary.wlmtest | Basic methods for the 'wlmtest' class |
| summary.wmf | Basic methods for the 'wmf' class |
| summary.wpmf | Basic methods for the 'wpmf' class |
| summary.wt | Basic methods for the 'wt' class |
| surrog | Creates surrogate time series, either Fourier surrogates or amplitude adjusted Fourier surrogates |
| syncexpl | Amount of synchrony explained, and related quantities |
| syncexpl.wlm | Amount of synchrony explained, and related quantities |
| synmat | Synchrony matrices |
| tts | Creator function for the 'tts' class |
| tts_methods | Basic methods for the 'tts' class |
| warray | Creates an array of wavelet transforms from input timeseries |
| wavmatwork | Facilitates the computations in synmat for coherence and ReXWT methods |
| wlm | Wavelet linear models |
| wlmfit | Fits a wavelet linear model |
| wlmtest | Statistical comparison of wavelet linear models |
| wlmtest_methods | Basic methods for the 'wlmtest' class |
| wlm_methods | Basic methods for the 'wlm' class |
| wmf | Computes the wavelet mean field from a matrix of spatiotemporal data. Also the creator function for the 'wmf' class. |
| wmf_methods | Basic methods for the 'wmf' class |
| wpmf | Wavelet phasor mean field |
| wpmf_methods | Basic methods for the 'wpmf' class |
| wt | Computes the wavelet transform of a timeseries. Also the creator function for the 'wt' class. |
| wt_methods | Basic methods for the 'wt' class |