Calling Haplotype-Based and Variant-Based Pedigree Disequilibrium Test for Rare Variants in Pedigrees

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Documentation for package ‘rvHPDT’ version 4.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

convert.factors.to.strings.in.dataframe	Convert data.frame columns from factors to characters
fullPedigree	Internal function.
HapMendlianCheck	Internal function.
mydaoshu	Internal function.
mypaste	Internal function.
randomPDT	Internal function.
rchild	Internal function.
rhapPDT	Calling haplotype-based and variant-based pedigree disequilibrium test for rare variants in pedigrees.
rvPDT.test	Variants-based pedigree disequilibrium test for rare variants in pedigrees.
rvPDT.test.permu	Variants-based pedigree disequilibrium test for rare variants in pedigrees.
rvPDT.test.sub	Internal function.
whap.prehap	Prepare haplotype pairs for hPDT tests in pedigree data.