# Perform Phylogenetic Path Analysis

## Documentation for package ‘phylopath’ version 1.4.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS

## Help Pages

as.data.frame.fitted_DAG | Extract the paths of a fitted causal model.
average | Extract and average the best supported models from a phylogenetic path analysis.
average_DAGs | Perform model averaging on a list of DAGs.
best | Extract and estimate the best supported model from a phylogenetic path analysis.
choice | Extract and estimate an arbitrary model from a phylogenetic path analysis.
cichlids | Cichlid traits and the evolution of cooperative breeding.
cichlids_tree | Cichlid phylogeny.
coef.fitted_DAG | Extract the coefficients and confidence intervals of a fitted causal model.
coef_plot | Plot path coefficients and their confidence intervals or standard errors.
confint.fitted_DAG | Extract the coefficients and confidence intervals of a fitted causal model.
DAG | Directed acyclic graphs (DAGs)
define_model_set | Define a model set.
est_DAG | Estimate path coefficients for a DAG.
phylo_path | Compare causal models in a phylogenetic context.
plot.DAG | Plot a directed acyclic graph.
plot.fitted_DAG | Plot a directed acyclic graph with path coefficients.
plot.phylopath_summary | Plot the comparison of a set of causal models.
plot_model_set | Plot several causal hypothesis at once.
red_list | Data on brain size, life history and vulnerability to extinction
red_list_tree | Mammalian phylogeny
rhino | Rhinogrades traits.
rhino_tree | Rhinogrades phylogeny.
show_warnings | Print out warnings from a phylopath analysis.