Drug Response Modeling and Biomarker Discovery

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Documentation for package ‘oncoPredict’ version 1.3.1

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package README

Help Pages

calcPhenotype	Generate predicted drug sensitivity scores
completeMatrix	This function performs an iterative matrix completion algorithm to predict drug response for pre-clinical data when there are missing ('NA') values.
doVariableSelection	Remove genes with low variation.
glds	This function determines drug-gene associations for pre-clinical data.
homogenizeData	Homogenizes two expression matrices
idwas	This function will test every drug against CNA amplifications or somatic mutations for your cancer type.
map_cnv	This function maps cnv data to genes.
predictionAccuracybyCV	Calculate Cross-Validation Scores using OncoPredict
summarizeGenesByMean	Average over duplicate gene values