Interactive Genome Browser
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Documentation for package ‘D3GB’ version 2.0
Help Pages
| D3GB-package | Interactive genome browsers with R |
| createAssembly | Creates a genome assembly for 'genomebrowser' or 'genomemap'. |
| D3GB | Interactive genome browsers with R |
| gbk2genomebrowser | Generates an interactive genome browser. |
| genomebrowser | Generates an interactive genome browser. |
| genomemap | Create an interative genome map. |
| genome_addGFF | Add track in a gff file to 'genomebrowser'. |
| genome_addSequence | Add genome sequence on Fasta format to 'genomebrowser'. |
| genome_addTrack | Add tracks to 'genomebrowser'. |
| genome_addVCF | Add VCF tracks to 'genomebrowser'. |
| genome_createLocalMode | Generates an interactive genome browser. |
| genome_createServerMode | Generates an interactive genome browser. |
| getAssemblyFromFasta | Create an assembly from a FASTA file for its use as parameter of 'genomebrowser' or 'genomemap'. |
| GRCh37 | Length of human chromosomes based on GRCh37 assembly |
| GRCh37.bands | Cytoband information based on GRCh37 |
| GRCh38 | Length of human chromosomes based on GRCh38 assembly |
| GRCh38.bands | Cytoband information based on GRCh38 |
| NCBI36 | Length of human chromosomes based on NCBI36 assembly |
| segmentation | Function for segmentate tracks in BED format. |