Can Episodic Recruitment be a Delayed Consequence of Continuous Reproduction?

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Documentation for package ‘recruitlag’ version 0.1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

caladenia_dormancy	Published dormancy, survival and detection for nine _Caladenia_ species
ceiling_calibration	Calibrate the pooled ceiling comparison against realised counts
ceiling_draws_table	One table for several records and routes
concentration	Concentration of a series in time
convolve_lag	Apply a lag profile to a reproductive record
expected_recruits	Expected recruitment per replicate unit under a lag profile
flat_kernel	The flat reference: every bin weighted equally
host_lag_test	The host-level test of the lag hypothesis
host_matrices	Build the unit-by-period matrices from a long data frame
lag_ceiling	The ceiling that any delay places on the concentration of recruitment
lag_ceiling_bayesboot	A posterior for the exceedance, by the Bayesian bootstrap over units
lag_ceiling_boot	A confidence interval for the exceedance, by resampling units
lag_ceiling_by	The ceiling for every unit in a long data frame
lag_ceiling_stan	A posterior for the exceedance of the expected series, from a model of the counts
lag_kernels	Families of lag weights
lepanthes	Census records of the epiphytic orchid _Lepanthes eltoroensis_
lepanthes_census	Census records of the epiphytic orchid _Lepanthes eltoroensis_
lepanthes_hosts	Census records of the epiphytic orchid _Lepanthes eltoroensis_
lepanthes_monthly	Census records of the epiphytic orchid _Lepanthes eltoroensis_
lepanthes_profile	Census records of the epiphytic orchid _Lepanthes eltoroensis_
phi_moment	Moment estimate of negative-binomial clumping under a heterogeneous mean
plot.ceiling_calibration	Plot a calibration or a host-level test
plot.host_lag_test	Plot a calibration or a host-level test
rain_cv	Concentration of a series in time
rain_expected	Lag profiles, and what they predict on the real record
rain_forest	The exceedance and its interval, for several records and routes on one axis
rain_gini	Concentration of a series in time
rain_indices	Compare the ceiling across candidate reproductive measures
rain_intervals	Check that the census intervals are what the analysis assumes
rain_profiles	Lag profiles, and what they predict on the real record
rain_series	Plot the two series on a common time axis
rain_sightings	First sightings by period, against what dormancy alone would produce
rain_strip	The ceiling strip: observed recruitment against the bound
rain_strips	Several strip figures instead of one unreadable one
rain_units	Every unit at once: its ceiling against what it recorded
recruit_triage	Are the first sightings recruits? Dormancy, detection and the discovery series
regimes	Six invented census records spanning the cases the test separates
regimes_truth	Six invented census records spanning the cases the test separates
series_from	Pull the two system-wide series from a data frame