Analysis of Antimicrobial Minimum Inhibitory Concentration Data

Documentation for package ‘MIC’ version 2.0.0

as.sir_vectorised	Convert MIC or Disk Diffusion to SIR, vectorised over antimicrobials
bias	Calculate MIC bias
clean_raw_mic	Clean up raw MIC for use as a feature
compare_mic	Compare and validate MIC values
compare_sir	Compare SIR results and generate categorical agreement
droplevels.mic_validation	Droplevels for MIC validation object
ecoffs	ECOFF data
essential_agreement	Essential agreement for MIC validation
example_mics	Example MIC data
fill_dilution_levels	Fill MIC dilution levels
force_mic	Force MIC-like into MIC-compatible format
get_mic	Get MIC meta-data from feature database
mic_censor	Censor MIC values
mic_range	Generate dilution series
mic_r_breakpoint	R breakpoint for MIC
mic_s_breakpoint	S breakpoint for MIC
mic_uncensor	Uncensor MICs
plot.mic_validation	Plot MIC validation results
print.mic_validation	Print MIC validation object
print.mic_validation_summary	Print MIC validation summary
qc_in_range	Check that MIC is within QC range
qc_on_target	Check that QC measurement is at the required target [Experimental]
standardise_mic	Standardise MIC to control strain [Experimental]
subset.mic_validation	Subset MIC validation object
summary.mic_validation	Summary of MIC validation results
table	Table
table.default	Table
table.mic_validation	Table