A Comprehensive Interface for Accessing the Protein Data Bank

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Documentation for package ‘rPDBapi’ version 1.1

• DESCRIPTION file.

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add_property	Add or Merge Properties for RCSB PDB Data Fetching
autoresolve_sequence_type	Automatically Determine the Sequence Type
ChemicalOperator	Chemical Operator for SMILES/InChI Searches
ComparisonOperator	Create a Comparison Search Operator
ContainsPhraseOperator	Create a Contains Phrase Search Operator
ContainsWordsOperator	Create a Contains Words Search Operator
data_fetcher	Fetch RCSB PDB Data Based on Specified Criteria
DefaultOperator	Create a Default Search Operator
describe_chemical	Describe Chemical Compound from RCSB PDB
ExactMatchOperator	Create an Exact Match Search Operator
ExistsOperator	Create an Existence Search Operator
FastaSequence	Create a FASTA Sequence Data Structure
fetch_data	Fetch Data from RCSB PDB Using a JSON Query
find_papers	Search for and Retrieve Paper Titles from PDB
find_results	Retrieve Specific Fields for Search Results from RCSB PDB
generate_json_query	Generate a JSON Query for RCSB PDB Data Retrieval
get_fasta_from_rcsb_entry	Retrieve FASTA Sequences from PDB Entry
get_info	Retrieve Information for a Given PDB ID
get_pdb_file	Download PDB Files from RCSB Database
infer_search_service	Infer the Appropriate Search Service
InOperator	Create an Inclusion Search Operator
parse_fasta_text_to_list	Parse Raw FASTA Text into a List of Sequences
perform_search	Perform a Search in the RCSB PDB
QueryGroup	Create a Grouped Query Object
QueryNode	Create a Query Node Object
query_search	Search Query Function
RangeOperator	Create a Range Search Operator
RequestOptions	Define Options for Search Requests
return_data_as_dataframe	Transform Response Data into a Dataframe
ScoredResult	Create a Scored Result Object
search_graphql	Perform a GraphQL Query to RCSB PDB
SeqMotifOperator	Create a Sequence Motif Operator for Searches
SequenceOperator	Create a Sequence Operator for Sequence-Based Searches
StructureOperator	Create a Structure Operator for Structure-Based Searches
walk_nested_dict	Recursively Walk Through a Nested Dictionary