Optimal Partitioning of Similarity Relations

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Documentation for package ‘optpart’ version 3.0-3

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archi Archipelago Analysis
bestfit Identify the Goodness-of-Fit of Cluster Members
bestopt Best Of Set Optimal Partitions From Random Starts
classmatch Classification Matching and Differencing
clique Maximal Clique Analysis
clique.test Clique Test
clustering Clustering Object
compare Compare Species Constancy for Specified Clusters
confus (Fuzzy) Confusion Matrix
consider Recommendations for Possible Merging of Clusters
disdiam Dissimilarity Diameters of a Partition
disdiam.default Dissimilarity Diameters of a Partition
disdiam.stride Dissimilarity Diameters of a Partition
extract Extract A Specific Cluster Solution From A Stride
extract.stride Extract A Specific Cluster Solution From A Stride
flexbeta Calculate a Flexible-Beta Dendrogram
fuzconfus (Fuzzy) Confusion Matrix
gensilwidth Generalized Silhouette Width
getsets Maximally Similar Sets Analysis
getsets.mss Maximally Similar Sets Analysis
lambda Goodman- Kruskal Lambda Index of Classification Association
maxpact Maximally Similar Sets Analysis
maxsimset Maximally Similar Sets Analysis
mergeclust Merge Specified Clusters in a Classification
mss.test Maximally Similar Sets Analysis
murdoch Indicator Species Analysis by Murdoch Preference Function
neighbor Neighbor Analysis of Partitions
optimclass Optimum Classification by Counts of Indicator Species
optindval Optimizing Classification by Maximizing Dufrene and Legendre's Indicator Value
optpart Optimal Partitioning of Dissimilarity/Distance Matrices
optpart.clustering Optimal Partitioning of Dissimilarity/Distance Matrices
optpart.default Optimal Partitioning of Dissimilarity/Distance Matrices
optpart.partana Optimal Partitioning of Dissimilarity/Distance Matrices
optpart.partition Optimal Partitioning of Dissimilarity/Distance Matrices
optpart.stride Optimal Partitioning of Dissimilarity/Distance Matrices
optsil Clustering by Optimizing Silhouette Widths
optsil.clustering Clustering by Optimizing Silhouette Widths
optsil.default Clustering by Optimizing Silhouette Widths
optsil.partana Clustering by Optimizing Silhouette Widths
optsil.partition Clustering by Optimizing Silhouette Widths
optsil.stride Clustering by Optimizing Silhouette Widths
opttdev Optimizing Classification by Minimizing Table Deviance
partana Partition Analysis
partana.clustering Partition Analysis
partana.default Partition Analysis
partana.partition Partition Analysis
partana.stride Partition Analysis
partition Convert Object to Partition Object
partition.clustering Convert Object to Partition Object
partition.partana Convert Object to Partition Object
phi Calculating the phi Statistic on Taxon Classifications
plot.clique Maximal Clique Analysis
plot.mss Maximally Similar Sets Analysis
plot.murdoch Indicator Species Analysis by Murdoch Preference Function
plot.partana Partition Analysis
plot.stride Stride: Producing a Sequence of Clusterings
print.disdiam Dissimilarity Diameters of a Partition
print.murdoch Indicator Species Analysis by Murdoch Preference Function
refine Refining a Classification by Re-Assigning Memberships
refine.default Refining a Classification by Re-Assigning Memberships
refine.dsvord Refining a Classification by Re-Assigning Memberships
refine.nmds Refining a Classification by Re-Assigning Memberships
refine.pco Refining a Classification by Re-Assigning Memberships
reordclust Re-order Clusters in a Classification
shoshsite Site Data for the Shoshone National Forest, Wyoming, USA
shoshveg Vascular Plant Species Cover for the Shoshone National Forest, Wyoming, USA
silhouette.clustering Produce a Silhouette Object From a Partana, Clustering, or Stride Object
silhouette.partana Produce a Silhouette Object From a Partana, Clustering, or Stride Object
silhouette.stride Produce a Silhouette Object From a Partana, Clustering, or Stride Object
slice Slice a Hierarchical Clustering Dendrogram with a Mouse
stride Stride: Producing a Sequence of Clusterings
summary.clique Maximal Clique Analysis
summary.murdoch Indicator Species Analysis by Murdoch Preference Function
summary.partana Partition Analysis
summary.tabdev Classification Validity Assessment by Table Deviance
tabdev Classification Validity Assessment by Table Deviance
tabdev.default Classification Validity Assessment by Table Deviance
tabdev.stride Classification Validity Assessment by Table Deviance
testpart Identify Misclassified Plots in a Partition
testsil Produce a Silhouette Object From a Partana, Clustering, or Stride Object
typal Identification of Typal Samples in a Partition