| adephylo-package | The adephylo package |
| .tipToRoot | Low-level auxiliary functions for adephylo |
| abouheif.moran | Abouheif's test based on Moran's I |
| adephylo | The adephylo package |
| bullseye | Fan-like phylogeny with possible representation of traits on tips |
| carni19 | Phylogeny and quantative trait of carnivora |
| carni70 | Phylogeny and quantitative traits of carnivora |
| distRoot | Compute the distance of tips to the root |
| distTips | Compute some phylogenetic distance between tips |
| listDD | List direct descendants for all nodes of a tree |
| listTips | List tips descendings from all nodes of a tree |
| lizards | Phylogeny and quantitative traits of lizards |
| maples | Phylogeny and quantitative traits of flowers |
| me.phylo | Computes Moran's eigenvectors from a tree or a phylogenetic proximity matrix |
| mjrochet | Phylogeny and quantitative traits of teleos fishes |
| moran.idx | Computes Moran's index for a variable |
| orthobasis.phylo | Computes Moran's eigenvectors from a tree or a phylogenetic proximity matrix |
| orthogram | Orthonormal decomposition of variance |
| palm | Phylogenetic and quantitative traits of amazonian palm trees |
| plot.ppca | Phylogenetic principal component analysis |
| ppca | Phylogenetic principal component analysis |
| print.ppca | Phylogenetic principal component analysis |
| procella | Phylogeny and quantitative traits of birds |
| proxTips | Compute some phylogenetic proximities between tips |
| scatter.ppca | Phylogenetic principal component analysis |
| screeplot.ppca | Phylogenetic principal component analysis |
| sp.tips | Find the shortest path between tips of a tree |
| summary.ppca | Phylogenetic principal component analysis |
| table.phylo4d | Graphical display of phylogeny and traits |
| tithonia | Phylogeny and quantitative traits of flowers |
| treePart | Define partitions of tips according from a tree |
| ungulates | Phylogeny and quantitative traits of ungulates. |