| SUMMER-package | SUMMER package documentation. |
| adjustPopMat | Generating pixellated populations, and population frames |
| aggPixelPreds | Helper function of 'pixelPopToArea' |
| aggPop | Aggregate populations to the specified areal level |
| aggregateSurvey | Aggregate estimators from different surveys. |
| areaPopToArea | Aggregate populations to the specified areal level |
| Benchmark | Benchmark posterior draws to national estimates |
| BRFSS | The BRFSS dataset |
| calibrateByRegion | Calibrate the point level totals so their sum matches the regional totals |
| ChangeRegion | Map region names to a common set. |
| compareEstimates | Plot heatmap comparing pairwise posterior exceedence probabilities for svysae object |
| DemoData | Simulated child mortality person-month dataset. |
| DemoData2 | Simulated dataset for prevalence mapping. |
| DemoMap | Uganda Admin-1 region map for illustration purpose |
| DemoMap2 | Kenya Admin-1 region map for illustration purpose |
| easpaKenya | Kenya 2009 Census Frame and Related Datasets |
| easpaKenyaNeonatal | Kenya 2009 Census Frame and Related Datasets |
| expit | Expit transformation |
| fitGeneric | Fit space-time smoothing models for a generic outcome from complex surveys. |
| fitINLA | Smoothed direct estimates for mortality rates |
| fitINLA2 | Cluster-level space-time smoothing models for mortality rates |
| getAdjusted | Adjust direct estimates and their associated variances |
| getAmat | Extract adjacency matrix from the map |
| getAreaName | Determines which administrative areas contain the given points |
| getBirths | Reformat full birth records into person-month format |
| getCounts | Aggregate person-month data into counts and totals by groups. |
| getDiag | Extract posterior summaries of random effects |
| getDirect | Obtain the Horvitz-Thompson direct estimates and standard errors using delta method for a single survey. |
| getDirectList | Obtain the Horvitz-Thompson direct estimates and standard errors using delta method for multiple surveys. |
| getExpectedNperEA | Internal functions for population simulation |
| getPoppsub | Generating pixellated populations, and population frames |
| getSmoothed | Extract smoothed estimates. |
| getSmoothedDensity | Calculate and plot posterior densities of the projected estimates |
| getSortIndices | Internal functions for population simulation |
| hatchPlot | Plot maps with uncertainty hatching. |
| iid.new | New random IID models for m-year to period random effects |
| iid.new.pc | New random IID models for m-year to period random effects |
| KenData | Auxiliary data for Kenya 2014 DHS. |
| kenyaPopulationData | Kenya 2009 Census Frame and Related Datasets |
| KingCounty | Map of King County |
| logit | Logit transformation |
| logitNormMean | Calculate the mean of a distribution whose logit is Gaussian |
| makePopIntegrationTab | Generating pixellated populations, and population frames |
| MalawiData | Auxiliary data for Malawi 2000, 2004, 2010, and 2015 DHS. |
| MalawiMap | Malawi Admin-2 map |
| mapEstimates | Mapping estimates for svysae object |
| mapPlot | Plot region-level variables on a map |
| mapPoints | Map GPS points to polygon regions |
| pixelPopToArea | Aggregate populations to the specified areal level |
| plot.SUMMERproj | Plot projection output. |
| poppaKenya | Kenya 2009 Census Frame and Related Datasets |
| poppRegionFromPopMat | Generate a population frame of a similar format to poppa argument of 'simPopCustom' with a custom set of regions |
| poppsubKenya | Kenya 2009 Census Frame and Related Datasets |
| print.SUMMERmodel | Print method for the smoothing models. |
| print.SUMMERmodel.svy | Print method for the smoothing models from 'smoothSurvey'. |
| print.SUMMERprojlist | Print method for the combined projection output. |
| projKenya | Map projection for Kenya |
| ridgePlot | Calculate and plot posterior densities of the projected estimates |
| rmultinom1 | Internal functions for population simulation |
| rMyMultinomial | Internal functions for population simulation |
| rMyMultinomialSubarea | Internal functions for population simulation |
| rst | Simulate spatial and temporal random effects |
| rStratifiedMultnomial | Internal functions for population simulation |
| rStratifiedMultnomialBySubarea | Internal functions for population simulation |
| rw.new | New random walk 1 and 2 models for m-year to period random effects |
| rw.new.pc | New random walk 1 and 2 models for m-year to period random effects |
| sampleNMultilevelMultinomial | Internal functions for population simulation |
| sampleNMultilevelMultinomialFixed | Internal functions for population simulation |
| setThresholdsByRegion | Set thresholds of population density for urbanicity classifications within each region of the given type |
| simhyper | Simulate hyperpriors from an GMRF |
| simPop | Simulate populations and areal prevalences |
| simPopCustom | Simulate populations and areal prevalences |
| simPopInternal | Internal functions for population simulation |
| simPopSPDE | Simulate populations and areal prevalences |
| simSPDE | Simulate from the SPDE spatial model |
| smoothArea | Small area estimation via basic area level model |
| smoothCluster | Cluster-level space-time smoothing models for mortality rates |
| smoothDirect | Smoothed direct estimates for mortality rates |
| smoothSurvey | Fit space-time smoothing models for a generic outcome from complex surveys. |
| smoothUnit | Smooth via basic unit level model |
| st.new | New Type I to IV space time interaction models for m-year to period random effects |
| st.new.pc | New Type I to IV space time interaction models for m-year to period random effects |
| summary.SUMMERmodel | Summary method for the smoothing models. |
| summary.SUMMERmodel.svy | Summary method for the smoothing model and output from 'smoothSurvey'. |
| summary.SUMMERprojlist | Summary method for the combined projection output. This function is the print method for class 'SUMMERprojlist'. |
| SUMMER | SUMMER package documentation. |
| tcpPlot | Discrete-color maps based on the True Classification Probabilities |