Fragment Analysis and Capillary Sequencing Tool Kit
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Documentation for package ‘FSAtools’ version 2.0.5
Help Pages
| add.model | Object constructor for binary predictors |
| align.fsa | Aligns peaks using size ladder |
| classify | Apply the binary predictor to FSA peaks |
| designFile | Process interface's design file |
| export.attr | Print an attribute of a 'fsa' object to a file |
| filter.fsa | Applies filter() to a "fsa" object |
| fusions.process | LD-RTPCR fusion identification by Sanger |
| generic.interface | Processing multiple FSA files |
| generic.log | Wrapper for 'generic.process' |
| generic.process | Processing multiple FSA files |
| genotype.closest.fsa | Calls alleles for a SNP genotyping experiment |
| genotype.N1.fsa | Calls alleles for a SNP genotyping experiment |
| genotype.ratio.fsa | Calls alleles for a SNP genotyping experiment |
| multiplot | Wrapper to layout |
| peaks.fsa | Get maximal value in ranges |
| plot.fsa | Plot method for "fsa" objects |
| plot.fsaModel | Plot method for "fsaModel" objects |
| print.fsa | Print method for "fsa" objects |
| read.abif | Read ABIF formatted files |
| read.fsa | Imports a .fsa file from Applied Biosystems |
| read.sanger | Imports a .ab1 file from Applied Biosystems corresponding to Sanger sequencing |
| train | Training function for binary predictors |
| wav2RGB | Converts light wavelengths to RGB colors |