Fast and Robust Deconvolution of Tumor Infiltrating Lymphocyte from Expression Profiles using Least Trimmed Squares

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Documentation for package ‘FARDEEP’ version 1.0.1

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alts Using the basic idea of least trimmed square to detect and remove outliers before estimating the coefficients. Adaptive least trimmed square.
fardeep Using the idea of least trimmed square to detect and remove outliers before estimating the coefficients. A robust method for gene-expression deconvolution.
LM22 Siganature matrix
mixture Gene-expression data from 14 follicular lymphoma patients
sample.sim Generate random sample with different proportion of outliers and leverage points
tuningBIC Tuning parameter k in function alts using Bayesian Information Criterion (BIC) with some adjustment.