| actg315raw | Data from ACTG315 trial of HIV viral load in adults undergoing ART |
| add_noise | Add noise to viral load observations |
| biphasic_root | Biphasic root function |
| filter_data | Prepare input data |
| filter_dataTTS | Prepare input data for non-parametric TTS calculations. |
| fit_model | Fit model and obtain parameter estimates |
| fit_model_triphasic | Fit model and obtain parameter estimates |
| get_biphasic | Compute the biphasic model curve |
| get_CI | Calculate parameter confidence intervals |
| get_CItable | Make parameter summary table |
| get_curve | Compute the model for a given subject's data and best-fit parameters |
| get_error | Evaluate error metric between data and model prediction |
| get_error_triphasic | Evaluate error metric between data and model prediction |
| get_nonparametricTTS | Non-parametric TTS function |
| get_optim_fit | Fit model to data using optim |
| get_optim_fit_triphasic | Fit triphasic model to data using optim |
| get_parametricTTS | Parametric TTS function |
| get_params | Extract fitted parameters |
| get_plottheme | Get plotting theme |
| get_singlephase | Compute the single phase model curve |
| get_transformed_params | Transform parameters |
| get_triphasic | Compute the triphasic model curve |
| get_TTS | Time to suppression (TTS) function |
| plot_data | Plot data |
| plot_model | Plot model fits |
| plot_pairs | Plot pairwise parameter distributions |
| plot_TTS | Plot time to suppression distribution |
| remove_vl0 | Prune viral load data |
| simulate_data | Create data function |
| simulate_time | Simulate timepoints for subjects |
| simulate_time_fixed | Simulate timepoints for subjects according to fixed design. |
| simulate_vl | Simulate vl for subjects |
| single_root | Single phase root function |
| summarize_model | Summarize model output |
| switch_params | Switch names of rate parameters |
| switch_simulated_params | Switch names of simulated rate parameters |
| transformVL | Transform viral load data |
| triphasic_root | Triphasic root function |
| tri_switch_params | Switch names of rate parameters |
| ushr | Master function |
| ushr_triphasic | Master function for the triphasic model |