| add_barrier_mesh | Transform a mesh object into a mesh with correlation barriers |
| add_utm_columns | Add UTM coordinates to a data frame |
| bc_coast | BC coastline data from ropensci/rnaturalearthhires |
| Beta | Additional families |
| censored_poisson | Additional families |
| delta_beta | Additional families |
| delta_gamma | Additional families |
| delta_gamma_mix | Additional families |
| delta_lognormal | Additional families |
| delta_lognormal_mix | Additional families |
| delta_poisson_link_gamma | Additional families |
| delta_poisson_link_lognormal | Additional families |
| delta_truncated_nbinom1 | Additional families |
| delta_truncated_nbinom2 | Additional families |
| Effect.sdmTMB | Calculate effects |
| emmeans.sdmTMB | Estimated marginal means with the 'emmeans' package with 'sdmTMB' |
| Families | Additional families |
| gamma_mix | Additional families |
| gather_sims | Extract parameter simulations from the joint precision matrix |
| get_cog | Extract a relative biomass/abundance index or a center of gravity |
| get_crs | Add UTM coordinates to a data frame |
| get_index | Extract a relative biomass/abundance index or a center of gravity |
| get_index_sims | Calculate a population index via simulation from the joint precision matrix |
| get_pars | Get TMB parameter list |
| halfnormal | Prior distributions |
| lognormal | Additional families |
| lognormal_mix | Additional families |
| make_mesh | Construct an SPDE mesh for sdmTMB |
| mvnormal | Prior distributions |
| nbinom1 | Additional families |
| nbinom2 | Additional families |
| normal | Prior distributions |
| pcod | Example data for Pacific Cod |
| pcod_2011 | Example data for Pacific Cod (years 2011 and after) |
| pcod_mesh_2011 | Example SPDE mesh for the Pacific Cod data (years 2011 and after) |
| pc_matern | Prior distributions |
| plot.sdmTMBmesh | Construct an SPDE mesh for sdmTMB |
| plot_anisotropy | Plot anisotropy from an sdmTMB model |
| plot_anisotropy2 | Plot anisotropy from an sdmTMB model |
| plot_pc_matern | Plot PC Matérn priors |
| plot_smooth | Plot a smooth term from an sdmTMB model |
| predict.sdmTMB | Predict from an sdmTMB model |
| qcs_grid | Example 2x2km prediction grid for Queen Charlotte Sound |
| replicate_df | Replicate a prediction data frame over time |
| residuals.sdmTMB | Residuals method for sdmTMB models |
| run_extra_optimization | Run extra optimization on an already fitted object |
| sanity | Sanity check of an sdmTMB model |
| sdmTMB | Fit a spatial or spatiotemporal GLMM with TMB |
| sdmTMBcontrol | Optimization control options |
| sdmTMBpriors | Prior distributions |
| sdmTMB_cv | Cross validation with sdmTMB models |
| sdmTMB_simulate | Simulate from a spatial/spatiotemporal model |
| sdmTMB_stacking | Perform stacking with log scores on 'sdmTMB_cv()' output |
| simulate.sdmTMB | Simulate from a fitted sdmTMB model |
| spread_sims | Extract parameter simulations from the joint precision matrix |
| student | Additional families |
| tidy.sdmTMB | Turn sdmTMB model output into a tidy data frame |
| truncated_nbinom1 | Additional families |
| truncated_nbinom2 | Additional families |
| tweedie | Additional families |
| visreg2d_delta | Plot sdmTMB models with the 'visreg' package |
| visreg_delta | Plot sdmTMB models with the 'visreg' package |