Assessment of Diagnostic and Prognostic Markers

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Documentation for package ‘sMSROC’ version 0.1.0

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auc.ci.boot Confidence intervals for the AUC (bootstrap)
auc.ci.empr Confidence intervals for the AUC (empirical variance estimation)
auc.ci.nvar Confidence intervals for the AUC (theoretical variance estimation)
check.ci.cl Check confidence level for AUC's confidence intervals
check.conf.int Checks for parameters to compute the confidence intervals for the AUC
check.grid Check grid
check.marker.binout Checks of diagnosis scenarios
check.marker.timeic Check of prognosis scenarios under interval censorship
check.marker.timerc Check of prognosis scenarios under right censorship
check.meth Check the method for estimating the predictive model
check.nboots Check number of bootstrap samples
check.ncpus Check number of CPUs
check.time Check time
check.type.outcome Check the type of scenario (diagnosis/prognosis)
compute.ROC Weighted empirical ROC curve estimator
conf.int.print AUC and confidence intervals
diabet Diabetes dataset
evol.auc Evolution of the AUCs
explore Exploratory data analysis
explore.plot Graphical exploratory data analysis
pred.model.binout Predictive model estimation in diagnosis scenarios
pred.model.emp Predictive model (naive estimation)
pred.model.timeic Predictive model in prognosis scenarios (I)
pred.model.timerc Predictive model in prognosis scenarios (II)
probs.pred Plot of the predictive model
sMS.binout sMS estimator for diagnostic biomarkers
sMS.timeic sMS estimator for prognostic biomarkers and interval censoring
sMS.timerc sMS estimator for prognostic biomarkers and right censorship
sMSROC sMS ROC curve estimator computation
sMSROC.plot Plot of the sMS ROC curve estimate
variance.probs Variance of the predictive model