| binaryPGLMM | Phylogenetic GLM for binary data |
| inv.logit | Invert logit function |
| partialR2 | Partial R2 |
| partialR2adj | Adjusted partial R2 |
| R2 | Calculate R2_lik, R2_resid, and R2_pred |
| R2_lik | Calculate R2_lik |
| R2_pred | Calculate R2_pred |
| R2_resid | Calculate R2_resid |
| rr2 | rr2: An R package to calculate R2s for regression models |
| transf_phy | Transform a phylogeny based on a phylolm model |