| rbioacc-package | The 'rbioacc' package. |
| .fonte | A simple implementation of to pivot_longer of tidyr |
| .index_col_exposure | Return column matching "expw", "exps", "expf", "exppw" of a 'data.frame' |
| .index_col_metabolite | Return column matching "concX" of a 'data.frame' where X is metabolite |
| .is_equal_rmInf | Check if two vectors 'x' and y are equal after remove 'Inf' |
| bioacc_metric | Biaccumulation metrics |
| bioacc_metric.fitTK | Biaccumulation metrics |
| Chironomus_benzoapyrene | Data on Chironomus exposed to benzoapyrene |
| Chiro_Creuzot | Data on Chironomus with several exposure routes. |
| corrMatrix | Correlations between parameters: colored matrix |
| corrPlot | Correlations between parameters: pairs plot |
| df_ppc | PPC data.frame |
| df_ppc.fitTK | PPC data.frame |
| df_PriorPost | Data frame of Posterior over Prior |
| df_PriorPost.fitTK | Data frame of Posterior over Prior |
| equations | Equations of the mathematical model used for the fit |
| exposure_names | Retrieve exposure routes names from object |
| Exposure_Sialis_lutaria | Data on Sialis lutaria exposure time series |
| fitTK | Posterior predictive check |
| fitTK.stanTKdataCST | Posterior predictive check |
| fitTK.stanTKdataVAR | Posterior predictive check |
| Gammarus_azoxistrobine_1d_Rosch2017 | Data on Gammarus exposed to azoxistrobine |
| Internal_Sialis_lutaria | Data on Sialis lutaria internal time series |
| Male_Gammarus_Merged | Male 'Gammarus fossarum' exposed to Hg spiked water. Three exposure concentrations were tested in triplicates. The duration of the accumulation phase is 4 days for 0.0000708021 and 0.000283208 mu g.m L^{-1} exposure concentrations, and 7 days for 0.000141604 mu g.m L^{-1} exposure concentration. |
| Male_Gammarus_seanine_growth | Male 'Gammarus pulex' exposed to seanine spiked water. A single exposure concentration was tested. The duration of the accumulation phase is 1.417 days. Three metabolites were quantified. The growth of organism was included. |
| Male_Gammarus_Single | Bio-accumulation data set for _Gammarus fossarum_ exposed to Hg spiked water. |
| mcmcTraces | Traces of MCMC iterations |
| modelData | Create a list giving data and parameters to use in the model inference. |
| modelData.data.frame | Create a list giving data and parameters to use in the model inference. |
| modelData_ode | Create a list giving data and parameters to use in the model inference. |
| Oncorhynchus_two | Data on Oncorhynchus exposition |
| plot.bioaccMetric | Plot function for object of class 'bioaccMetric' |
| plot.fitTK | Plotting method for 'fitTK' objects |
| plot.predictTK | Plotting method for 'predictTK' objects |
| plot.predictTKstan | Plotting method for 'predictTK' objects |
| plot_exposure | Plot exposure profile |
| plot_PriorPost | Plot Posterior over Prior |
| plot_PriorPost.df_PP | Plot Posterior over Prior |
| plot_PriorPost.fitTK | Plot Posterior over Prior |
| ppc | PPC data.frame |
| ppc.fitTK | PPC data.frame |
| predict.fitTK | Prediction function using 'fitTK' object |
| predict_manual | Prediction function using 'fitTK' object |
| predict_stan | Prediction function using 'fitTK' object |
| psrf | Potential Scale Reduction Factors (PSRF) of the parameters |
| quantile_table | Quantiles of parameters |
| rbioacc | The 'rbioacc' package. |
| replace_ | Replace element of a vector |
| t95 | Return the time at 95% depuration of the parent component |
| waic | Widely Applicable Information Criterion (WAIC) |