| get_map_genotypes | Maximum _a posteriori_ (MAP) estmation of autopolyploid genotypes |
| point_Hexp | Estimation of expected heterozygosity |
| point_Hobs | Estimation of observed heterozygosity |
| polyfreqs | Bayesian population genomics in autopolyploids |
| polyfreqs_pps | Posterior predictive model checks for polyfreqs |
| ref_reads | Reference reads matrix |
| simple_freqs | Point estimation of allele frequencies based on read counts |
| sim_reads | Simulation of sequencing read counts and genotypes |
| total_reads | Total reads matrix |