Simulation of Chromosomal Regions Shared by Family Members

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Documentation for package ‘ibdsim2’ version 1.5.0

• DESCRIPTION file.

Help Pages

convertPos	Conversion of genetic map positions
customMap	Custom recombination map
estimateCoeffs	Estimation of one- and two-locus relatedness coefficients
estimateIdentity	Estimation of one- and two-locus relatedness coefficients
estimateInbreeding	Estimation of one- and two-locus relatedness coefficients
estimateKappa	Estimation of one- and two-locus relatedness coefficients
estimateKinship	Estimation of one- and two-locus relatedness coefficients
estimateTwoLocusIdentity	Estimation of one- and two-locus relatedness coefficients
estimateTwoLocusInbreeding	Estimation of one- and two-locus relatedness coefficients
estimateTwoLocusKappa	Estimation of one- and two-locus relatedness coefficients
estimateTwoLocusKinship	Estimation of one- and two-locus relatedness coefficients
extractIds	Extract ID labels from simulation output
findPattern	Find specific IBD patterns
haploDraw	Draw haplotypes onto a pedigree plot
ibdsim	IBD simulation
ibdsim2	ibdsim2: Simulation of chromosomal regions shared by family members
loadMap	Load a built-in genetic map
mapLen	Physical and genetic map lengths
mapLen.chromMap	Physical and genetic map lengths
mapLen.genomeMap	Physical and genetic map lengths
maplengths	Physical and genetic map lengths
physRange	Physical and genetic map lengths
physRange.chromMap	Physical and genetic map lengths
physRange.genomeMap	Physical and genetic map lengths
plotSegmentDistribution	Scatter plots of IBD segment distributions
profileSimIBD	Simulate markers conditional on a given IBD pattern
realised	Realised relatedness
realisedIdentity	Realised relatedness
realisedInbreeding	Realised relatedness
realisedKappa	Realised relatedness
realisedKinship	Realised relatedness
segmentStats	Summary statistics for identified segments
uniformMap	Uniform recombination maps
zeroIBD	Probability of zero IBD