Gene Analysis Toolkit

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Documentation for package ‘genekitr’ version 1.1.9

• DESCRIPTION file.

Help Pages

as.enrichdat	Modify dataframe for enrichment plot
biocOrg_name	Datasets geneList entrez gene list with decreasing fold change value
Datasets	Datasets geneList entrez gene list with decreasing fold change value
deg	Datasets geneList entrez gene list with decreasing fold change value
ensOrg_name	Datasets geneList entrez gene list with decreasing fold change value
expoSheet	Export list of data sets into different 'Excel' sheets
geneList	Datasets geneList entrez gene list with decreasing fold change value
genGSEA	Gene Set Enrichment Analysis
genInfo	Get gene related information
genORA	Gene Over-Representation Enrichment Analysis
getGEO	Get GEO metadata
getPubmed	Get 'PubMed' paper records by searching abstract
hsapiens_probe_platform	Datasets geneList entrez gene list with decreasing fold change value
importCP	Import 'clusterProfiler' result
importPanther	Import 'Panther' web result
keggOrg_name	Datasets geneList entrez gene list with decreasing fold change value
msig_category	Datasets geneList entrez gene list with decreasing fold change value
msig_org	Datasets geneList entrez gene list with decreasing fold change value
plotEnrich	Plot for gene enrichment analysis of ORA method
plotEnrichAdv	Advanced Plot for gene enrichment analysis of ORA method
plotGSEA	Plot for gene enrichment analysis of GSEA method
plotVenn	Venn plot for groups of genes
plotVolcano	Volcano plot for differential expression analysis
plot_theme	Themes for all plots
simGO	Simplify GO enrichment result
transId	Transform id among symbol, entrezid, ensembl and uniprot.
transProbe	Transform probe id to symbol, entrezid, ensembl or uniprot.