| lines.additivePenal |
Plot Method for an Additive frailty model. |
| lines.frailtyPenal |
Plot Method for a Shared frailty model. |
| lines.jointNestedPenal |
Plot method for a joint nested frailty model. |
| lines.jointPenal |
Plot Method for a Joint frailty model. |
| lines.jointSurroPenal |
Plot Method for the one-step Joint surrogate model for the evaluation of a canditate surrogate endpoint. |
| lines.longiPenal |
Plot Method for a joint model for longitudinal data and a terminal event. |
| lines.nestedPenal |
Plot Method for a Nested frailty model. |
| lines.trivPenal |
Plot Method for a trivariate joint model for longitudinal data, recurrent events and a terminal event. |
| lines.trivPenalNL |
Plot Method for a Non-Linear Trivariate Joint Model for Recurrent Events and a Terminal Event with a Biomarker Described with an ODE. |
| longDat |
Longitudinal semicontinuous biomarker dataset (TPJM) |
| longiPenal |
Fit a Joint Model for Longitudinal Data and a Terminal Event |
| loocv |
The trials leave-one-out crossvalidation for the one-step Joint surrogate model for evaluating a canditate surrogate endpoint. |
| plot.additivePenal |
Plot Method for an Additive frailty model. |
| plot.Diffepoce |
Plot difference of EPOCE estimators between two joint frailty models. |
| plot.epoce |
Plot values of estimators of the Expected Prognostic Observed Cross-Entropy (EPOCE). |
| plot.frailtyPenal |
Plot Method for a Shared frailty model. |
| plot.jointNestedPenal |
Plot method for a joint nested frailty model. |
| plot.jointPenal |
Plot Method for a Joint frailty model. |
| plot.jointSurroMed |
Plot Method for a joint surrogate mediation analysis model. |
| plot.jointSurroPenal |
Plot Method for the one-step Joint surrogate model for the evaluation of a canditate surrogate endpoint. |
| plot.jointSurroPenalloocv |
Plot of trials leave-one-out crossvalidation Outputs from the one-step Joint surrogate model for evaluating a canditate surrogate endpoint. |
| plot.longiPenal |
Plot Method for a joint model for longitudinal data and a terminal event. |
| plot.multivPenal |
Plot Method for a multivariate frailty model. |
| plot.nestedPenal |
Plot Method for a Nested frailty model. |
| plot.predFrailty |
Plot predictions using a Cox or a shared frailty model. |
| plot.predJoint |
Plot predictions using a joint frailty model. |
| plot.predLongi |
Plot predictions using a joint model for longitudinal data and a terminal event or a trivariate joint model for longitudinal data, recurrent events and a terminal event. |
| plot.trivPenal |
Plot Method for a trivariate joint model for longitudinal data, recurrent events and a terminal event. |
| plot.trivPenalNL |
Plot Method for a Non-Linear Trivariate Joint Model for Recurrent Events and a Terminal Event with a Biomarker Described with an ODE. |
| plotTreatPredJointSurro |
Plot of the prediction of the treatment effect on the true endpoint and the STE |
| predict.jointSurroPenal |
S3method predict for the one-step Joint surrogate models for the evaluation of a canditate surrogate endpoint. |
| prediction |
Prediction probabilities for Cox proportional hazard, Shared, Joint frailty models, Joint models for longitudinal data and a terminal event and Trivariate joint model for longitudinal data, recurrent events and a terminal event (linear and non-linear). |
| print.additivePenal |
Print a Short Summary of parameter estimates of an additive frailty model |
| print.Cmeasures |
Print a short summary of results of Cmeasure function. |
| print.frailtyPenal |
Print a Short Summary of parameter estimates of a shared frailty model |
| print.jointNestedPenal |
Print a Short Summary of parameter estimates of a joint nested frailty model |
| print.jointPenal |
Print a Short Summary of parameter estimates of a joint frailty model |
| print.jointSurroPenal |
Summary of the random effects parameters, the fixed treatment effects, and the surrogacy evaluation criteria estimated from a joint surrogate model |
| print.longiPenal |
Print a Summary of parameter estimates of a joint model for longitudinal data and a terminal event |
| print.multivPenal |
Print a Short Summary of parameter estimates of a multivariate frailty model |
| print.nestedPenal |
Print a Short Summary of parameter estimates of a nested frailty model |
| print.predFrailty |
Print a short summary of results of prediction function. |
| print.prediction |
Print a short summary of results of prediction function. |
| print.predJoint |
Print a short summary of results of prediction function. |
| print.predLongi |
Print a short summary of results of prediction function. |
| print.summary.additivePenal |
summary of parameter estimates of an additive frailty model |
| print.summary.frailtyPenal |
summary of parameter estimates of a shared frailty model |
| print.summary.jointNestedPenal |
summary of parameter estimates of a joint nested frailty model |
| print.summary.jointPenal |
summary of parameter estimates of a joint frailty model |
| print.summary.jointSurroMed |
Short summary of the random effects parameters, the fixed treatment effects, and the surrogacy evaluation criteria estimated from a joint surrogate mediation model |
| print.summary.jointSurroPenalSimul |
Short summary of the simulation studies based on a joint surrogate model |
| print.summary.longiPenal |
Short summary of fixed covariates estimates of a joint model for longitudinal data and a terminal event |
| print.summary.nestedPenal |
summary of regression coefficient estimates of a nested frailty model |
| print.summary.trivPenal |
Short summary of fixed covariates estimates of a joint model for longitudinal data, recurrent events and a terminal event |
| print.summary.trivPenalNL |
Short summary of fixed covariates estimates of a non-linear trivariate joint model for longitudinal data, recurrent events and a terminal event |
| print.trivPenal |
Print a Summary of parameter estimates of a joint model for longitudinal data, recurrent events and a terminal event |
| print.trivPenalNL |
Print a Summary of parameter estimates of a non-linear trivariate joint model for longitudinal data, recurrent events and a terminal event |
| slope |
Identify variable associated with the random slope |
| statFP |
Concordance measures in shared frailty and Cox proportional hazard models |
| ste |
Surrogate threshold effect for the one-step Joint surrogate model for the evaluation of a canditate surrogate endpoint. |
| subcluster |
Identify subclusters |
| summary.additivePenal |
summary of parameter estimates of an additive frailty model |
| summary.frailtyPenal |
summary of parameter estimates of a shared frailty model |
| summary.jointNestedPenal |
summary of parameter estimates of a joint nested frailty model |
| summary.jointPenal |
summary of parameter estimates of a joint frailty model |
| summary.jointSurroMed |
Short summary of the random effects parameters, the fixed treatment effects, and the surrogacy evaluation criteria estimated from a joint surrogate mediation model |
| summary.jointSurroPenal |
Short summary of the surrogacy evaluation criteria estimated from a joint surrogate model |
| summary.jointSurroPenalSimul |
Short summary of the simulation studies based on a joint surrogate model |
| summary.longiPenal |
Short summary of fixed covariates estimates of a joint model for longitudinal data and a terminal event |
| summary.multivPenal |
summary of parameter estimates of a multivariate frailty model. |
| summary.nestedPenal |
summary of regression coefficient estimates of a nested frailty model |
| summary.trivPenal |
Short summary of fixed covariates estimates of a joint model for longitudinal data, recurrent events and a terminal event |
| summary.trivPenalNL |
Short summary of fixed covariates estimates of a non-linear trivariate joint model for longitudinal data, recurrent events and a terminal event |
| survDat |
Survival dataset (TPJM) |
| SurvIC |
Create a survival object for interval censoring and possibly left truncated data |
| survival |
Survival function |