Detecting Epistatic Selection with Partially Observed Genotype Data

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Documentation for package ‘epistasis’ version 0.0.1-1

• DESCRIPTION file.

Help Pages

epistasis-package	Detecting Epistatic Selection with Partially Observed Genotype Data
B73Ki11	A family from Nested Association Mapping (NAM) in maize
cutoffs	Cut-points
CviCol	Arabidopsis thaliana genotype data
episelect	Model selection
episim	Generate discrete ordinal data
epistasis	Detecting epistatic selection from multi-loci genotype data
lower.upper	Calculates lower band and upper band
plot.epi	plot for S3 class "epi"
plot.episelect	Plot function for S3 class "episelect"
plot.episim	Plot function for 'S3' class '"episim"'
print.epi	Print function for S3 class "epi"
print.episim	Print function for S3 class "episim"
R.approx	The expectation of covariance using approximation method
R.gibbs	The expectation of covariance matrix using Gibbs sampling