Point Data Quality Assessment and Coordinate Conversion

---

Documentation for package ‘biogeo’ version 1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

biogeo-package	Point data quality assessment and coordinate conversion
addmainfields	Adds required fields to a dataframe containing coordinates for points
alternatives	Determine where an incorrect point record should be placed by showing alternative positions for that point based on common errors in datasets.
alternatives2	Determine where an incorrect point record should be placed by showing alternative positions for that point based on common errors in datasets.
alternativesenv	Determine where an incorrect point record should be placed by showing alternative positions for that point based on common errors in datasets.
biogeo	Point data quality assessment and coordinate conversion
checkdatastr	Checks data structure
coord2numeric	Converts coordinates that are factors into numeric values
dat	Species collection records dataset
datm	A dataset for a marine species
dd2dmslat	Convert decimal degree coordinates for latitude into degrees, minutes and seconds
dd2dmslong	Convert decimal degree coordinates for longitude into degrees, minutes and seconds
dem	Digital elevation model 10 minute spatial resolution
dms2dd	Converts coordinates in degrees, minutes, seconds into decimal degrees
dmsabs	Separates a coordinate string into degrees, minutes and seconds when there are no delimiters
dmsparse	Parse coordinate strings into separate degree, minute and second fields
dmsparsefmt	Parse coordinate string using a format string
duplicatesexclude	Exclude duplicate point records per species per grid cell
edat	Species collection records dataset and environmental variables data
elevcheck	Elevation check
env2stack	Read environmental variable rasters
errorcheck	Identifies errors in a dataset of point records
fieldsmissing	Determines whether any of the required fields are missing from the dataframe
finddecimals	Find coordinates that are in decimal degrees
fmtcheck	Coordinate string format check
gbifdat	A dataset of records from GBIF
geo2envid	Interactive plot to explore points in geographical and environmental space
geo2envpca	Interactive plot to explore points in geographical and environmental space
getextent	Get the extent of an object
getformat	Get formats of coordinates
getletter	Find letters in coordinates
keepmainfields	Keep main fields in a dataframe.
missingcoords	Finds indices of records in a dataset where the coordinates are missing
missingvalsexclude	Excludes records with missing values for points
modified	Identify records that were modified between two dates
modifiedtoday	Identify records that were modified today
msk60	msk60
nearestcell	Assigns points that fall into the sea to the centre of the nearest adjacent coastal grid cell for terrestrial species and to nearest sea cell for marine species
outliers	Detects outliers using values extracted from an environmental variable
parsecoords	Parse coordinates into separate fields
places	A dataset of localities
plotsetup	Produces devices for plotting
points2shape	Save data to a points shape file
pointsworld	Plots point records on a world map using their latitude and longitude
precisioncheck	Check the precision of the coordinates
precisionenv	Check precision of records
quickclean	Automated data cleaning
quickrich	Perform error checks and produce richness map
renamefields	Rename particular fields in a dataframe
richness	Produced a species richness map
richnessmap	Map of the number of species or number of records per grid cell
rjack	Outlier detection using the Reverse Jackknife
sep	Separate coordinates into degrees, minutes and seconds
speciescount	Count number of records per species
substddmm	Swap degrees and minutes in a coordinate
uniqueformats	List unique coordinate formats
wclim	Returns Worldclim bioclimatic variable names
world	World country polygons