Detection and Reconstruction of Muscle Fibers from diceCT Image Data

Documentation for package ‘GoodFibes’ version 0.1.8

GoodFibes-package	Detection and Reconstruction of Muscle Fibers from diceCT Image Data
ant.final	Ant muscle fibers finalized
ant.raw	Raw ant muscle fibers
check.overlap	Check if muscle fibers are redundant
color.scale	A simple wrapper to create colors for a continuous variable
crop.stack	Automated imaging cropping
equalize.stack	Automated histogram equalization of image state
fiber.angle	Experimental! Calculating the orientation of muscle fibers
fiber.curve	Calculate the relative curvature of muscle fibers
fiber.lengths	Calculated the length of smoothed muscle fibers
fibers.smoothed	Smoothing of estimated fiber paths
fuse.fibers	Fuse incomplete fibers
fuse.fibers.auto	Automated repeated fusing of fiber paths
good.fibes	Automated detection of muscle fibers from diceCT scans
GoodFibes	Detection and Reconstruction of Muscle Fibers from diceCT Image Data
muscle.plot	Plot a single muscle fiber
muscle.plot.multi	Plot multi muscle fibers with a muscle outline
muscle.plot.stl	Plot and export muscle fibers to stl
pointsGenerator	Line points generator
quality.check	Quality testing of possible muscle fibers detected by good.fibes
sequencePlot	Plot the path of a muscle fiber generated using good.fibes
thresholdPlot	Plot image from diceCT stack using thresholding