Process Control and Internal Validation of Forensic STR Kits

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Documentation for package ‘strvalidator’ version 2.3.0

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A C D E F G H I L M P R S T

strvalidator-package Process Control and Internal Validation of Forensic STR Kits

-- A --

addColor Add Color Information.
addData Adds New Data Columns to a Data Frame
addData_gui Add Data
addDye_gui Add Dye Information
addMarker Add Missing Markers.
addMarker_gui Add Missing Markers
addOrder Add Marker Order.
addSize Add Size Information.
addSize_gui Add Size Information
auditTrail Log Audit Trail.

-- C --

calculateAllele Calculate Allele
calculateAllele_gui Calculate Allele
calculateAllT Calculate Stochastic Thresholds
calculateAllT_gui Calculate Stochastic Thresholds
calculateAT Calculate Analytical Threshold
calculateAT6 Calculate Analytical Threshold
calculateAT6_gui Calculate Analytical Threshold
calculateAT_gui Calculate Analytical Threshold
calculateCapillary Calculate Capillary Balance
calculateCapillary_gui Calculate Capillary Balance
calculateConcordance Calculate Concordance.
calculateConcordance_gui Calculate Concordance
calculateCopies Calculate Allele Copies
calculateCopies_gui Calculate Allele Copies
calculateDropout Calculate Drop-out Events
calculateDropout_gui Calculate Dropout Events
calculateHb Calculate Heterozygote Balance
calculateHb_gui Calculate Heterozygote Balance
calculateHeight Calculate Peak Height.
calculateHeight_gui Calculate Peak Height
calculateLb Calculate Inter-locus Balance
calculateLb_gui Calculate Locus Balance
calculateMixture Calculate Mixture.
calculateMixture_gui Calculate Mixture
calculateOL Analyze Off-ladder Alleles
calculateOL_gui Analyze Off-ladder Alleles
calculateOverlap Calculate Bins Overlap
calculateOverlap_gui Calculate Bins Overlap
calculatePeaks Calculate Peaks
calculatePeaks_gui Calculate Peaks
calculatePullup Calculate Spectral Pull-up
calculatePullup_gui Calculate Spectral Pull-up
calculateRatio Calculate Ratio
calculateRatio_gui Calculate Ratio
calculateResultType Calculate Result Type
calculateResultType_gui Calculate Result Type
calculateSlope Calculate Profile Slope.
calculateSlope_gui Calculate Profile Slope
calculateSpike Detect Spike
calculateSpike_gui Detect Spike
calculateStatistics Summary Statistics
calculateStatistics_gui Calculate Statistics
calculateStutter Calculate Stutter
calculateStutter_gui Calculate Stutter
calculateT Calculate Stochastic Threshold
checkDataset Check Dataset
checkSubset Check Subset
checkSubset_gui Check Subset
colConvert Convert Columns
colNames Column Names
columns Column Actions
columns_gui Column Actions
combineBinsAndPanels Combine Bins And Panels Files.
combine_gui Combine Datasets
cropData_gui Crop Or Replace

-- D --

detectKit Detect Kit

-- E --

editData_gui Edit or View Data Frames
export Export
export_gui Export

-- F --

filterProfile Filter Profile
filterProfile_gui Filter Profile

-- G --

generateEPG Generate EPG
generateEPG_gui Generate EPG
getKit Get Kit
getSetting Get Settings.
getStrings Get Language Strings
ggsave_gui Save Image
guessProfile Guess Profile
guessProfile_gui Guess Profile

-- H --

heightToPeak Height To Peak.

-- I --

import Import Data
import_gui Import Data

-- L --

listObjects List Objects

-- M --

makeKit_gui Make Kit
maskAT Mask And Prepare Data To Analyze Analytical Threshold
modelDropout_gui Model And Plot Drop-out Events

-- P --

plotAT_gui Plot Analytical Threshold
plotBalance_gui Plot Balance
plotCapillary_gui Plot Capillary Balance
plotContamination_gui Plot Contamination
plotDistribution_gui Plot Distribution
plotDropout_gui Plot Drop-out Events
plotGroups_gui Plot Empirical Cumulative Distributions
plotKit_gui Plot Kit Marker Ranges
plotPeaks_gui Plot Peaks
plotPrecision_gui Plot Precision
plotPullup_gui Plot Pull-up
plotRatio_gui Plot Ratio
plotResultType_gui Plot Result Type
plotSlope_gui Plot Profile Slope
plotStutter_gui Plot Stutter

-- R --

ref1 ESX17 Positive Control Profile
ref11 ESX17 Positive Control Profile
ref2 SGMPlus example data
ref3 ESX17 example data for dropout analysis.
ref4 ESX17 example data for dropout analysis.
ref51 ESX17 example data for mixture analysis.
ref52 ESX17 example data for mixture analysis.
ref61 Fusion example data for dropout analysis.
ref62 Fusion example data for dropout analysis.
ref7 ESSplex SE QS example data for inhibition analysis.
removeArtefact Remove Artefacts
removeArtefact_gui Remove Artefact
removeSpike Remove Spikes
removeSpike_gui Remove Spike

-- S --

scrambleAlleles Scramble Alleles
set1 Typing data in 'GeneMapper' format
set2 SGMPlus example data
set3 ESX17 example data for dropout analysis.
set4 ESX17 example data for dropout analysis.
set5 ESX17 example data for mixture analysis.
set6 Fusion example data for dropout analysis.
set7 ESSplex SE QS example data for inhibition analysis.
slim Slim Data Frames
slim_gui Slim Data Frames
sortMarker Sort Markers
strvalidator Graphical User Interface For The STR-validator Package

-- T --

tableBalance Table Balance
tableBalance_gui Table Balance
tableCapillary Table Capillary
tableCapillary_gui Table Capillary
tablePrecision Calculate Precision
tablePrecision_gui Table Precision
tableStutter Table Stutter
tableStutter_gui Table Stutter
trim Trim Data
trim_gui Trim Data