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| snpEnrichment-package | ~ Overview: SNPs enrichment analysis ~ |
| Chromosome | Class 'Chromosome' |
| chromosome | Class 'Chromosome' |
| Chromosome-class | Class 'Chromosome' |
| chromosome-method | Class 'Chromosome' |
| chromosome-methods | Class 'Chromosome' |
| compareEnrichment | Compare enrichment analysis between two SNPs list |
| compareEnrichment-method | Compare enrichment analysis between two SNPs list |
| compareEnrichment-methods | Compare enrichment analysis between two SNPs list |
| Enrichment | Class 'Enrichment' |
| enrichment | Class 'Enrichment' |
| Enrichment-class | Class 'Enrichment' |
| enrichment-method | Class 'Enrichment' |
| enrichment-methods | Class 'Enrichment' |
| EnrichSNP | Class '"EnrichSNP"' |
| EnrichSNP-class | Class '"EnrichSNP"' |
| excludeSNP | Exclude SNPs from Enrichment analysis |
| excludeSNP-method | Exclude SNPs from Enrichment analysis |
| excludeSNP-methods | Exclude SNPs from Enrichment analysis |
| GC | Full Garbage Collection |
| getEnrichSNP | Get all eSNP/xSNP which are enriched |
| getEnrichSNP-method | Get all eSNP/xSNP which are enriched |
| getEnrichSNP-methods | Get all eSNP/xSNP which are enriched |
| initFiles | Initialize files for enrichment analysis |
| is.chromosome | Is an Chromosome object |
| is.chromosome-method | Is an Chromosome object |
| is.chromosome-methods | Is an Chromosome object |
| is.enrichment | Is an Enrichment object |
| is.enrichment-method | Is an Enrichment object |
| is.enrichment-methods | Is an Enrichment object |
| mclapply2 | Parallel Versions of 'lapply' with cores and memory control |
| plot | Plot method (S4) for 'Enrichment' object |
| plot-method | Plot method (S4) for 'Enrichment' object |
| plot-methods | Plot method (S4) for 'Enrichment' object |
| Print method (S4) | |
| print-method | Class '"EnrichSNP"' |
| print-method | Print method (S4) |
| print-methods | Print method (S4) |
| readEnrichment | Read and create EnrichmentRatio object |
| reSample | Compute enrichment analysis on an 'Enrichment' object |
| reSample-method | Compute enrichment analysis on an 'Enrichment' object |
| reSample-methods | Compute enrichment analysis on an 'Enrichment' object |
| show-method | Class 'Chromosome' |
| show-method | Class '"EnrichSNP"' |
| show-method | Class 'Enrichment' |
| snpEnrichment | ~ Overview: SNPs enrichment analysis ~ |
| toyEnrichment | Toy dataset with SNP data |
| toyEnrichment-dataset | Toy dataset with SNP data |
| transcript | Transcript information in order to check the CIS status for SNPs |
| transcript-dataset | Transcript information in order to check the CIS status for SNPs |
| writeLD | Linkage Disequilibrium (LD) computation with PLINK |
| [-method | Class 'Chromosome' |
| [-method | Class '"EnrichSNP"' |
| [-method | Class 'Enrichment' |
| [<--method | Class 'Chromosome' |
| [<--method | Class '"EnrichSNP"' |
| [<--method | Class 'Enrichment' |