| correctionParams | Correct the parameters of the pulse model |
| estimateExpression | Estimated Expression |
| estimateParams | Estimated pulse model parameters! |
| getParams | Get pulseModel params |
| getParams-method | getParams-method |
| getRates | Get rate values |
| getRates-method | getRates-method |
| integrateA | integral function |
| integrateAC | integral function |
| plotRates | draw Method |
| plotRates-method | plotRate-Method |
| predictExpression | predict Expression |
| predictExpression-method | predictExpression-method |
| preExp | A gene list that stores predicted values of gene expression and a 0.95 confidence interval. |
| pulseModel | pulse function |
| pulseRates | A pulseTDModel Rdata file containing 100 gene expression data, transcriptional dynamic data already related parameters. |
| pulseTDmodel | pulseTD-model |
| pulseTDmodel-class | pulseTD-model |
| rpkmres | a list containing the expression values of exons and introns |
| rpkmSim | A simulated gene expressing Rdata file that contains expression data for total RNA, precursor RNA, and 4sU-labeled RNA. |
| splitA6Params | esitmate transcription parameters |
| splitB4Params | esitmate degradation parameters |
| splitC5Params | esitmate processing parameters |