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| identify_subsets | Internal function to identify sub-sets of data and return a list with IDs. |
| manhattan_plot | Single Trait Manhattan plot |
| mt_gwas | Multi-trait Genome wide association model. |
| pleioR | Fit a multi-trait model to test for genetic pleiotropy |
| pleio_ideogram | Plot ideogram from pleio_test results |
| pleio_plot | Pleiotropic manhattan plot |
| pleio_simulate | Create simulations |
| pleio_test | Sequential Wald test for pleiotropy |
| xrsx_xrsy | Calculate XRsX and XRsY |