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| affectionPhe | Affection Phenotype Object |
| as.cped | Phenotype Object |
| as.ped | Pedigree Object |
| as.pedlist | Pedigree Object |
| as.phe | Phenotype Object |
| as.pped | Pedigree Object |
| c2bat | C2BAT |
| fread.cped | Phenotype Object |
| fread.ped | Pedigree Object |
| fread.phe | Phenotype Object |
| is.cped | Phenotype Object |
| is.finished | Cluster result functions |
| is.ped | Pedigree Object |
| is.pedlist | Pedigree Object |
| is.phe | Phenotype Object |
| is.pped | Pedigree Object |
| obfuscate | Obfuscating Pedigree and Phenotype Files |
| pbat | PBAT Graphical and Command Line Interface |
| pbat.clean | Cleaning pbat(), pbat.last(), pbat.m() output. |
| pbat.concatenate | Cluster result functions |
| pbat.create.commandfile | PBAT Graphical and Command Line Interface |
| pbat.files | PBAT Graphical and Command Line Interface |
| pbat.firsttime | Help and Reporting Information |
| pbat.get | Set Pbat Parameters |
| pbat.getmode | Set Pbat Parameters |
| pbat.getwine | Set Pbat Parameters |
| pbat.help | Help and Reporting Information |
| pbat.last | PBAT Graphical and Command Line Interface |
| pbat.last.rawResults | PBAT Graphical and Command Line Interface |
| pbat.load | Cluster result functions |
| pbat.m | PBAT Graphical and Command Line Interface |
| pbat.obj | PBAT Graphical and Command Line Interface |
| pbat.power | Power Exploration |
| pbat.powerCmd | Power Exploration |
| pbat.set | Set Pbat Parameters |
| pbat.setmode | Set Pbat Parameters |
| pbat.setmode.defaults | Set Pbat Parameters |
| pbat.setVersionCheck | Set Pbat Parameters |
| pbat.setwine | Set Pbat Parameters |
| pbat.status | PBAT Status of Run |
| pbat.unwork | pbatRwork Temp Directory |
| pbat.work | pbatRwork Temp Directory |
| ped.markerNames | Pedigree Object |
| plot.pbat | 'pbat' Object Generic Routines |
| plotCPed | Phenotype Object |
| plotPed | Pedigree Object |
| print.pbat | 'pbat' Object Generic Routines |
| read.cped | Phenotype Object |
| read.ped | Pedigree Object |
| read.phe | Phenotype Object |
| read.pped | Pedigree Object |
| sort.cped | Phenotype Object |
| sort.ped | Pedigree Object |
| sort.phe | Phenotype Object |
| summary.pbat | 'pbat' Object Generic Routines |
| top | top |
| write.cped | Phenotype Object |
| write.pbat | Saving 'pbat' Object |
| write.pbat.csv | Saving 'pbat' Object |
| write.ped | Pedigree Object |
| write.phe | Phenotype Object |