| Check2D | Plot 2D footprint and footprint triangle points to check for erros in 2D calculation |
| clustered_patches | A clustering function |
| compute_energy_per_face | Function will compute the DNE per face. |
| cross | Cross product function |
| cSize | Centroid Size Function |
| Directional_Bins | This bins the faces into directional categories |
| DNE | Calculate Dirichlet normal energy of a surface |
| DNE3d | Plot results of a DNE analysis of a surface |
| DNE_Legend | Make legend for DNE3d plot |
| edge_vertices | Function for finding the edge vertices |
| Equal_Vertex_Normals | Important function for re-doing the vertex normals for the DNE calculation. |
| face_areas | Function to calculate face areas. |
| Face_Normals | Function to find Face Normals |
| Hills | Hills - sine-cosine plane |
| Hills.mesh | Hills - sine-cosine plane |
| index_paired_directed_faces | Index of paired faces with directions |
| molaR_Batch | Run a batch of molaR analyses |
| molaR_bgplot | Internal function for making molaR plot legends |
| molaR_Clean | Clean up problem ply files |
| OPC | Calculate orientation patch count of a surface |
| OPC3d | Plot results of OPC analysis of a surface |
| OPCr | Calculate average orientation patch count after several rotations |
| OPCr_Example1 | OPCr_Example1 - object created by OPCr function used as an example. |
| OPCr_Example1.list | OPCr_Example1 - object created by OPCr function used as an example. |
| OPCr_Example2 | OPCr_Example2 - object created by OPCr function used as an example. |
| OPCr_Example2.list | OPCr_Example2 - object created by OPCr function used as an example. |
| OPC_Legend | function for building a legend in OPC plots |
| patches_for_each_direction | Function for gathering the patches for each direction |
| patches_per | A function for patches within each face |
| patch_details | Function for gathering patch details for each Orientation patch |
| plyClip | Clip a ply file |
| read.AVIZO.ply | Read mesh data from ply files saved by AVIZO |
| remove_boundary_faces | Remove boundary faces |
| remove_outliers | Mask outliers on some faces |
| repmat | Replicate a matrix |
| RFI | Calculate Boyer's (2008) relief index for a surface |
| RFI3d | Plot 3D and 2D areas of a mesh used to calculate relief index |
| RFI_Legend | function for building a legend for RFI |
| Slope | Function to calculate the average slope of a surface |
| Slope3d | Plot results of a Slope analysis of a surface |
| Slope_Legend | Plotting subfunction for making slope plot legend |
| Tooth | Tooth - scan of USNM_112176 lower M1 from Chlorocebus spp. |
| Tooth.mesh | Tooth - scan of USNM_112176 lower M1 from Chlorocebus spp. |
| tr | Trace function |
| vertex_to_face_list | function for making a list of faces on each vertex |