Gene set analysis based on GSZ-scoring function and asymptotic p-value

[Up] [Top]

Documentation for package ‘mGSZ’ version 1.0

Help Pages

calc_z_var Internal mGSZ function
count.prob.sum Internal mGSZ function
count_hyge_var_mean Internal mGSZ function
diffFCscore Internal mGSZ function
diffScore Internal mGSZ function
emp Internal mGSZ function
emp.wrs Internal WRS function
FC Internal mGSZ function
flipListStruct Internal mGSZ function
geneSetsList Convert gene set data in gmt file to R list
KS.p.values Internal KS function
KS.score Internal KS function
listTOclMatrix Internal mGSZ function
logEVcdf Internal mGSZ function
logNORMcdf Internal mGSZ function
mAllez.p.values Internal mGSZ function
mGSA.p.values Internal mGSZ function
mGSZ Gene set analysis based on Gene Set Z-scoring function and asymptotic p-value
mGSZ.adj.mean.std Internal mGSZ function
mGSZ.p.values Internal mGSZ function
mGSZ.test.score Internal mGSZ function
mGSZ.test.score.stb2 Internal mGSZ function
mGSZ.test.score.stb3 Internal mGSZ function
mGSZ.test.score.stb4 Internal mGSZ function
mGSZ.test.score2 Internal mGSZ function
mGSZ.test.score4 Internal mGSZ function
pick.data.cols Internal mGSZ function
plotProfile Plot GSZ scoring function profile
rm.rows.with.noSetMembers Internal mGSZ function
rm.small.genesets Internal mGSZ function
SS.p.values Internal mGSZ function
SS.test.score Internal mGSZ function
StabPlotData GSZ scoring function profile data
sumTestscore Internal mGSZ function
sumVarMean_calc Internal mGSZ function
toMatrix Internal mGSZ function
toTable Table with top gene sets
WRS.p.values Internal WRS function
WRS.test.score Internal WRS function