| itsdm-package | Isolation forest-based presence-only species distribution modeling |
| cmcc_bioclim | Download historic Bioclimatic indicators (BIOs) named CMCC-BioClimInd. |
| convert_to_pa | Convert predicted suitability to presence-absence map. |
| dim_reduce | Reduce dimensions using auto-correlation between numeric raster layers. |
| evaluate_po | Evaluate the model based on presence-only data. |
| future_cmcc_bioclim | Download future Bioclimatic indicators (BIOs) named CMCC-BioClimInd. |
| future_worldclim2 | A function to parse the future climate from worldclim version 2.1. |
| independent_response | Calculate independent responses of each variables. |
| isotree_po | Function to run extended isolation forest as SDM. |
| itsdm | Isolation forest-based presence-only species distribution modeling |
| mainland_africa | Boundary of mainland Africa |
| marginal_response | Calculate marginal responses of each variables. |
| occ_virtual_species | Occurrence dataset of a virtual species |
| plot.EnvironmentalOutlier | Function to plot suspicious outliers in an observation dataset. |
| plot.IndependentResponse | Function to plot independent response curves. |
| plot.MarginalResponse | Function to plot marginal response curves. |
| plot.PAConversion | Function to plot results of conversion to PA. |
| plot.POEvaluation | Function to plot presence-only evaluation. |
| plot.ShapDependence | Function to plot variable dependence obtained from SHAP test. |
| plot.SpatialResponse | Function to plot spatial variable dependence maps. |
| plot.VariableAnalysis | Function to plot variable importance. |
| plot.VariableContribution | Function to plot variable contribution for target observations. |
| print.EnvironmentalOutlier | Print summary information from PAConversion object. |
| print.PAConversion | Print summary information from PAConversion object. |
| print.POEvaluation | Print summary information from presence-only evaluation object. |
| print.POIsotree | Print summary information from POIsotree object. |
| print.ReducedImageStack | Print summary information from ReducedImageStack object. |
| print.VariableAnalysis | Print summary information from variable importance object. |
| probability | Estimate suitability on stars object using trained 'isolation.forest' model. |
| shap_dependence | Calculate Shapley value based variable dependence. |
| spatial_response | Calculate spatial response or dependence plot. |
| suspicious_env_outliers | Function to detect suspicious outliers based on environmental variables. |
| variable_analysis | Function to evaluate relative importance of each variable. |
| variable_contrib | Evaluate variable contributions for targeted observations. |
| worldclim2 | Download environmental variables made by worldclim version 2.1. |