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| bioPN-package | Simulation of deterministic and stochastic biochemical reaction networks using Petri Nets |
| atr | Helper functions for model definition |
| GibsonBruck | Simulation of a biochemical system |
| GillespieDirectCR | Simulation of a biochemical system |
| GillespieDirectGB | Simulation of a biochemical system |
| GillespieOptimDirect | Simulation of a biochemical system |
| HaseltineRawlings | Simulation of a biochemical system |
| init | Helper functions for model definition |
| load.cfn | Helper functions for model definition |
| PartitionedLeaping | Simulation of a biochemical system |
| RungeKuttaDormandPrince45 | Simulation of a biochemical system |
| unload.cfns | Helper functions for model definition |