Pathway Testing for Longitudinal Omics

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Documentation for package ‘SlaPMEG’ version 1.0.1

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multslapmeg Testing multiple pathways using SLaPMEG (shared latent process mixed effects model and Globaltest) for longitudinal Omics data
pairsetinval Estimating initial values for paired slapmeg based on seperate lme models
pairslapmeg Testing pathways using SLaPMEG (shared latent process mixed effects model and Globaltest) for longitudinal Omics data based on pairwise estimation approach (a computational solution for latrge pathways)
plotslapmeg Plot the estimated random effects from SLaPMEG seperated for the study groups
print.mslapmeg Print objects from 'multslapmeg'
print.slapmeg Print objects from 'slapmeg'
setinval Estimating initial values for slapmeg based on seperate lme models
simslapmeg Simulate longitudinal data based on a shared latent process mixed effects model (SlaPMEG)
slapGT Run step II via globaltest package
slapmeg Testing pathways using SLaPMEG (shared latent process mixed effects model and Globaltest) for longitudinal Omics data
summary.mslapmeg Summary of 'slapmeg' objects
summary.slapmeg Summary of 'slapmeg' objects