Stochastic Ordering Using Permutations (and Pairwise Comparisons)

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Documentation for package ‘SOUP’ version 1.1

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.DesM Design Matrix For Pairwise Differences
.dummyze From Factor To Dummy Variables
.makePermSpaceID Constructs Row Indices Permutation Space
.makePValueMat Construct Univariate _p_-Values Matrix
.orthoX Residualises the response variables _w.r.t._ the matrix of covariates like in the linear models, therefore projecting on the space I - H where H is the _hat_ matrix of X
as.list Methods for function 'as.list' in package 'SOUP'
as.list-method Methods for function 'as.list' in package 'SOUP'
BHS Multiplicity adjustment by Bonferroni-Holm-Shaffer's rule
FWEminP FWE Adjustment Using Permutation
initialize Methods for function 'initialize' in package 'SOUP': constructor
initialize-method Methods for function 'initialize' in package 'SOUP': constructor
iterNPC Iterated NonParametric Combination
NPC NonParametric Combination of Test Statistic
PermSpace Class 'PermSpace'
PermSpace-class Class 'PermSpace'
plot Class 'PermSpace'
plot-method Class 'PermSpace'
plot-method Class 'SoupObject'
print 'signature(x = "PermSpace")' It prints the whole object on screen (mostly useful for external saving)
print-method Class 'PValueMat'
print-method Class 'PermSpace'
print-method Class 'SoupObject'
print-method 'signature(x = "PermSpace")' It prints the whole object on screen (mostly useful for external saving)
PValueMat Class 'PValueMat'
PValueMat-class Class 'PValueMat'
rankingRule Performs the ranking
RankResults Ranking Results
RankResults-class Ranking Results
show 'signature(object = "PermSpace")' Shows only the main information (on screen) for the object
show-method Class 'PValueMat'
show-method Class 'PermSpace'
show-method Class 'SoupObject'
show-method 'signature(object = "PermSpace")' Shows only the main information (on screen) for the object
SOUP SOUP Main Function
SoupObject Class 'SoupObject'
SoupObject-class Class 'SoupObject'
t2p From Test Statistics To _p_-Values