| MALDIquant-package | Quantitative Analysis of Mass Spectrometry Data |
| AbstractMassObject-class | Class "AbstractMassObject" |
| alignSpectra | Align MassSpectrum objects. |
| as.matrix-method | Class "AbstractMassObject" |
| averageMassSpectra | Averages 'MassSpectrum' objects. |
| binPeaks | Align Peaks into discrete bins. |
| calibrateIntensity | Calibrates intensities of a MassSpectrum object. |
| calibrateIntensity-method | Calibrates intensities of a MassSpectrum object. |
| coordinates | Class "AbstractMassObject" |
| coordinates-method | Class "AbstractMassObject" |
| coordinates<- | Class "AbstractMassObject" |
| coordinates<--method | Class "AbstractMassObject" |
| createMassPeaks | Creates a MassPeaks object. |
| createMassSpectrum | Creates a MassSpectrum object. |
| detectPeaks | Detects peaks in a MassSpectrum object. |
| detectPeaks-method | Detects peaks in a MassSpectrum object. |
| determineWarpingFunctions | Determine warping functions of MassPeaks objects. |
| estimateBaseline | Estimates the baseline of a MassSpectrum object. |
| estimateBaseline-method | Estimates the baseline of a MassSpectrum object. |
| estimateNoise | Estimates the noise of a MassSpectrum object. |
| estimateNoise-method | Estimates the noise of a MassSpectrum object. |
| fiedler2009subset | Example Mass Spectra (raw) |
| filterPeaks | Removes less frequent peaks. |
| findEmptyMassObjects | Finds or removes empty AbstractMassObject objects in a list. |
| intensity | Class "AbstractMassObject" |
| intensity-method | Class "AbstractMassObject" |
| intensity<- | Class "AbstractMassObject" |
| intensity<--method | Class "AbstractMassObject" |
| intensityMatrix | Converts a list of MassPeaks objects into a matrix. |
| isEmpty | Class "AbstractMassObject" |
| isEmpty-method | Class "AbstractMassObject" |
| isMassPeaks | Tests for MassSpectrum or MassPeaks object. |
| isMassPeaksList | Tests a list of MassSpectrum or MassPeaks objects. |
| isMassSpectrum | Tests for MassSpectrum or MassPeaks object. |
| isMassSpectrumList | Tests a list of MassSpectrum or MassPeaks objects. |
| isRegular | Class "MassSpectrum" |
| isRegular-method | Class "MassSpectrum" |
| labelPeaks | Draws peak labels to plot. |
| labelPeaks-method | Draws peak labels to plot. |
| length-method | Class "AbstractMassObject" |
| lines-method | Class "AbstractMassObject" |
| MALDIquant | Quantitative Analysis of Mass Spectrometry Data |
| MALDIquant-parallel | Parallel Support in Package 'MALDIquant' |
| mass | Class "AbstractMassObject" |
| mass-method | Class "AbstractMassObject" |
| mass<- | Class "AbstractMassObject" |
| mass<--method | Class "AbstractMassObject" |
| MassPeaks | Class "MassPeaks" |
| MassPeaks-class | Class "MassPeaks" |
| MassSpectrum | Class "MassSpectrum" |
| MassSpectrum-class | Class "MassSpectrum" |
| match.closest | Relaxed Value Matching |
| mergeMassPeaks | Merges 'MassPeaks' objects. |
| metaData | Class "AbstractMassObject" |
| metaData-method | Class "AbstractMassObject" |
| metaData<- | Class "AbstractMassObject" |
| metaData<--method | Class "AbstractMassObject" |
| monoisotopicPeaks | Finds monoisotopic peaks in a MassPeaks object. |
| monoisotopicPeaks-method | Finds monoisotopic peaks in a MassPeaks object. |
| msiSlices | Turn a list of AbstractMassObjects into a mass spectrometry imaging slice. |
| mz | Class "AbstractMassObject" |
| mz-method | Class "AbstractMassObject" |
| mz<- | Class "AbstractMassObject" |
| mz<--method | Class "AbstractMassObject" |
| plot-method | Plots an AbstractMassObject object. |
| plotMsiSlice | Plots a Mass Spectrometry Imaging dataset. |
| plotMsiSlice-method | Plots a Mass Spectrometry Imaging dataset. |
| points-method | Class "AbstractMassObject" |
| referencePeaks | Creates a reference 'MassPeaks' object. |
| removeBaseline | Removes the baseline of a MassSpectrum object. |
| removeBaseline-method | Removes the baseline of a MassSpectrum object. |
| removeEmptyMassObjects | Finds or removes empty AbstractMassObject objects in a list. |
| smoothIntensity | Smoothes intensities of a MassSpectrum object. |
| smoothIntensity-method | Smoothes intensities of a MassSpectrum object. |
| snr | Class "MassPeaks" |
| snr-method | Class "MassPeaks" |
| totalIonCurrent | Class "MassSpectrum" |
| totalIonCurrent-method | Class "MassSpectrum" |
| transformIntensity | Transforms intensities of an AbstractMassObject object. |
| transformIntensity-method | Transforms intensities of an AbstractMassObject object. |
| trim | Trim an AbstractMassObject object. |
| trim-method | Trim an AbstractMassObject object. |
| warpMassPeaks | Run warping functions on AbstractMassObject objects. |
| warpMassSpectra | Run warping functions on AbstractMassObject objects. |
| [-method | Class "AbstractMassObject" |